JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RANBP3L_chr5_36241913_36306902	0/0	c0007	1398	1	0	0	1	0	0	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3_chr19_5911139_5983140	1/1	c0001	1704	309	86	63	117	8	33	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	c0002	1704	4	3	1	0	0	0	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	c0003	1704	2	0	0	2	0	0	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	c0004	1704	1	0	1	0	0	0	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	c0005	1704	1	1	0	0	0	0	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	c0006	1704	1	0	0	1	0	0	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	c0007	1704	1	0	0	0	0	1	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	c0008	1704	1	1	0	0	0	0	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	c0009	1704	1	1	0	0	0	0	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	c0010	1704	1	0	1	0	0	0	copy fasta	RANBP3	chr19	5911139	5983140
RANBP6_chr9_6006025_6020624	1/1	c0001	3318	189	13	42	99	11	22	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	c0002	3318	88	8	25	41	3	11	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	c0003	3318	70	35	1	30	0	4	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	c0004	3318	35	15	3	11	0	6	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	c0005	3318	16	12	2	2	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	c0006	3318	3	1	0	2	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	c0007	3318	3	3	0	0	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	c0008	3318	2	2	0	0	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	c0009	3318	1	0	0	1	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	c0010	3318	1	0	0	1	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	c0011	3318	1	0	0	1	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	c0012	3318	1	0	0	1	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	c0013	3318	1	0	1	0	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	c0014	3318	1	0	0	1	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	c0015	3318	1	1	0	0	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	c0016	3318	1	0	0	0	0	1	copy fasta	RANBP6	chr9	6006025	6020624
RANBP9_chr6_13616498_13716835	1/1	c0001	2190	195	42	38	90	9	14	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	c0002	2190	139	39	31	45	5	19	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	c0003	2193	9	1	1	7	0	0	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	c0004	2193	3	0	0	3	0	0	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	c0005	2193	3	0	0	3	0	0	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	c0006	2190	2	0	2	0	0	0	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	c0007	2190	1	1	0	0	0	0	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	c0008	2190	1	0	0	1	0	0	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	c0009	2190	1	1	0	0	0	0	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	c0010	2190	1	0	0	1	0	0	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	c0011	2190	1	0	0	1	0	0	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	c0012	2190	1	1	0	0	0	0	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	c0013	2190	1	0	0	1	0	0	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	c0014	2190	1	0	0	0	0	1	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	c0015	2190	1	1	0	0	0	0	copy fasta	RANBP9	chr6	13616498	13716835
RANGAP1_chr22_41239779_41291187	0/1	c0001	1764	185	28	35	95	6	20	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	1/0	c0002	1764	107	29	9	54	3	11	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	c0003	1764	44	20	12	1	4	7	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	c0004	1764	7	6	1	0	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	c0005	1764	3	2	1	0	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	c0006	1764	2	0	0	0	0	2	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	c0007	1764	2	2	0	0	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	c0008	1764	1	0	0	0	1	0	copy fasta	RANGAP1	chr22	41239779	41291187