JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RBMXL3_chrX_115184410_115197868	0/0	c0062	3232	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0063	3231	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0064	3231	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0065	3231	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0066	3204	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0067	3204	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0068	3231	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0069	3231	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0070	3231	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0071	3231	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0072	3231	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0073	3231	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	c0074	3231	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMX_chrX_136868461_136885725	1/1	c0001	1176	292	71	47	131	11	30	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	c0002	1177	6	2	1	2	0	1	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	c0003	1178	1	0	0	1	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	c0004	1177	1	0	0	1	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	c0005	1175	1	0	0	1	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	c0006	1176	1	1	0	0	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	c0007	1175	1	0	0	0	0	1	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	c0008	1177	1	0	0	1	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	c0009	1176	1	0	0	0	0	1	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	c0010	1177	1	0	0	1	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	c0011	1179	1	1	0	0	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMX_chrX_136868461_136885725	0/0	c0012	1176	1	1	0	0	0	0	copy fasta	RBMX	chrX	136868461	136885725
RBMY1A1_chrY_21529879_21554326	0/0	c0001	1491	17	8	3	5	0	1	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	c0002	1491	16	0	3	11	1	1	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	c0003	1491	10	2	1	6	0	1	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	c0004	1491	2	1	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	c0005	1492	1	0	1	0	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	c0006	1496	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	c0007	1493	1	0	1	0	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	c0008	1490	1	0	0	0	0	1	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	c0009	1491	1	0	0	0	0	1	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	c0010	1491	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	c0011	1491	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	c0012	1492	1	0	1	0	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	c0013	1490	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	c0014	1487	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	c0015	1490	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	c0016	1491	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	c0017	1492	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	c0018	1495	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	c0019	1380	1	1	0	0	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	c0020	1491	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	c0021	1492	1	0	0	0	1	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	c0022	1495	1	0	0	1	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1A1_chrY_21529879_21554326	0/0	c0023	1491	1	0	1	0	0	0	copy fasta	RBMY1A1	chrY	21529879	21554326
RBMY1B_chrY_21506338_21530786	0/0	c0001	1491	1	0	0	1	0	0	copy fasta	RBMY1B	chrY	21506338	21530786
RBMY1B_chrY_21506338_21530786	0/0	c0002	1491	1	0	0	1	0	0	copy fasta	RBMY1B	chrY	21506338	21530786