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geneid	378948
ensemblid	ENSG00000242875.7
hgncid	23914
symbol	RBMY1B
name	RNA binding motif protein Y-linked family 1 member B
refseq_nuc	NM_001006121.4
refseq_prot	NP_001006121.1
ensembl_nuc	ENST00000383020.7
ensembl_prot	ENSP00000372484.3
mane_status	MANE Select
chr	chrY
start	21511338
end	21525786
strand	+
ver	v1.2
region	chrY:21511338-21525786
region5000	chrY:21506338-21530786
regionname0	RBMY1B_chrY_21511338_21525786
regionname5000	RBMY1B_chrY_21506338_21530786

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	496	1	0	0	1	0	0	1	RBMY1B_chrY_21506338_21530786	RBMY1B	copy fasta	chrY	21506338	21530786
a0002	0/0	496	1	0	0	1	0	0	1	RBMY1B_chrY_21506338_21530786	RBMY1B	copy fasta	chrY	21506338	21530786
a0003	0/0	496	1	0	0	1	0	0	1	RBMY1B_chrY_21506338_21530786	RBMY1B	copy fasta	chrY	21506338	21530786

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	1491	1	0	0	1	0	0	RBMY1B_chrY_21506338_21530786	RBMY1B	copy fasta	chrY	21506338	21530786
c0002	0/0	1491	1	0	0	1	0	0	RBMY1B_chrY_21506338_21530786	RBMY1B	copy fasta	chrY	21506338	21530786
c0003	0/0	1491	1	0	0	1	0	0	RBMY1B_chrY_21506338_21530786	RBMY1B	copy fasta	chrY	21506338	21530786

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	431	2	0	0	2	0	0	RBMY1B_chrY_21506338_21530786	RBMY1B	copy fasta	chrY	21506338	21530786
t0002	0/0	431	1	0	0	1	0	0	RBMY1B_chrY_21506338_21530786	RBMY1B	copy fasta	chrY	21506338	21530786

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	1	0	0	1	0	0	RBMY1B_chrY_21506338_21530786	RBMY1B	chrY	21506338	21530786
g0002	0/0	1	0	0	1	0	0	RBMY1B_chrY_21506338_21530786	RBMY1B	chrY	21506338	21530786
g0003	0/0	1	0	0	1	0	0	RBMY1B_chrY_21506338_21530786	RBMY1B	chrY	21506338	21530786

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0002	0/0	1491	1	0	0	1	0	0	RBMY1B_chrY_21506338_21530786	RBMY1B	copy fasta	chrY	21506338	21530786
a0002c0003	0/0	1491	1	0	0	1	0	0	RBMY1B_chrY_21506338_21530786	RBMY1B	copy fasta	chrY	21506338	21530786
a0003c0001	0/0	1491	1	0	0	1	0	0	RBMY1B_chrY_21506338_21530786	RBMY1B	copy fasta	chrY	21506338	21530786

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0002t0001	0/0	1921	1	0	0	1	0	0	RBMY1B_chrY_21506338_21530786	RBMY1B	copy fasta	chrY	21506338	21530786
a0002c0003t0002	0/0	1921	1	0	0	1	0	0	RBMY1B_chrY_21506338_21530786	RBMY1B	copy fasta	chrY	21506338	21530786
a0003c0001t0001	0/0	1921	1	0	0	1	0	0	RBMY1B_chrY_21506338_21530786	RBMY1B	copy fasta	chrY	21506338	21530786

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0002t0001g0003	0/0	1	0	0	1	0	0	RBMY1B_chrY_21506338_21530786	RBMY1B	chrY	21506338	21530786
a0002c0003t0002g0001	0/0	1	0	0	1	0	0	RBMY1B_chrY_21506338_21530786	RBMY1B	chrY	21506338	21530786
a0003c0001t0001g0002	0/0	1	0	0	1	0	0	RBMY1B_chrY_21506338_21530786	RBMY1B	chrY	21506338	21530786

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
NA18983	hp1	a0001	c0002	t0001	g0003	EAS	JPT	RBMY1B_chrY_21506338_21530786	RBMY1B	chrY	21506338	21530786
NA18985	hp1	a0002	c0003	t0002	g0001	EAS	JPT	RBMY1B_chrY_21506338_21530786	RBMY1B	chrY	21506338	21530786
NA19089	hp1	a0003	c0001	t0001	g0002	EAS	JPT	RBMY1B_chrY_21506338_21530786	RBMY1B	chrY	21506338	21530786

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:21517221	A A	T T	2	a0001 a0002 a0001 a0002	2	NA18983.hp1 NA18985.hp1 NA18983.hp1 NA18985.hp1	missense_variant	MODERATE	c.378A>T c.378A>T	p.Gln126His p.Gln126His	RBMY1B	ENSG00000242875.7	transcript	ENST00000383020.7	protein_coding	4/12	530/1921	378/1491	126/496			chrY	21517221
chrY:21525429	A A	G G	1	a0001 a0001	1	NA18983.hp1 NA18983.hp1	missense_variant	MODERATE	c.1412A>G c.1412A>G	p.Tyr471Cys p.Tyr471Cys	RBMY1B	ENSG00000242875.7	transcript	ENST00000383020.7	protein_coding	12/12	1564/1921	1412/1491	471/496			chrY	21525429

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:21522980	T T	C C	1	a0001c0002 a0001c0002	1	NA18983.hp1 NA18983.hp1	synonymous_variant	LOW	c.816T>C c.816T>C	p.Ser272Ser p.Ser272Ser	RBMY1B	ENSG00000242875.7	transcript	ENST00000383020.7	protein_coding	8/12	968/1921	816/1491	272/496			chrY	21522980

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:21525650	C C	T T	1	a0002c0003t0002 a0002c0003t0002	1	NA18985.hp1 NA18985.hp1	3_prime_UTR_variant	MODIFIER	c.142C>T c.142C>T		RBMY1B	ENSG00000242875.7	transcript	ENST00000383020.7	protein_coding	12/12				142		chrY	21525650

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:21511947	G G	C C	3	a0001c0002t0001g0003 a0002c0003t0002g0001 a0003c0001t0001g0002 a0001c0002t0001g0003 a0002c0003t0002g0001 a0003c0001t0001g0002	3	NA18983.hp1 NA18985.hp1 NA19089.hp1 NA18983.hp1 NA18985.hp1 NA19089.hp1	intron_variant	MODIFIER	c.-5+462G>C c.-5+462G>C		RBMY1B	ENSG00000242875.7	transcript	ENST00000383020.7	protein_coding	1/11						chrY	21511947
chrY:21511981	C C	T T	3	a0001c0002t0001g0003 a0002c0003t0002g0001 a0003c0001t0001g0002 a0001c0002t0001g0003 a0002c0003t0002g0001 a0003c0001t0001g0002	3	NA18983.hp1 NA18985.hp1 NA19089.hp1 NA18983.hp1 NA18985.hp1 NA19089.hp1	intron_variant	MODIFIER	c.-5+496C>T c.-5+496C>T		RBMY1B	ENSG00000242875.7	transcript	ENST00000383020.7	protein_coding	1/11						chrY	21511981
chrY:21512336	GT GT	G G	1	a0002c0003t0002g0001 a0002c0003t0002g0001	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-5+854delT c.-5+854delT		RBMY1B	ENSG00000242875.7	transcript	ENST00000383020.7	protein_coding	1/11					INFO_REALIGN_3_PRIME	chrY	21512336
chrY:21513142	C C	G G	2	a0001c0002t0001g0003 a0003c0001t0001g0002 a0001c0002t0001g0003 a0003c0001t0001g0002	2	NA18983.hp1 NA19089.hp1 NA18983.hp1 NA19089.hp1	intron_variant	MODIFIER	c.-4-205C>G c.-4-205C>G		RBMY1B	ENSG00000242875.7	transcript	ENST00000383020.7	protein_coding	1/11						chrY	21513142
chrY:21513474	CGT CGT	C C	3	a0001c0002t0001g0003 a0002c0003t0002g0001 a0003c0001t0001g0002 a0001c0002t0001g0003 a0002c0003t0002g0001 a0003c0001t0001g0002	3	NA18983.hp1 NA18985.hp1 NA19089.hp1 NA18983.hp1 NA18985.hp1 NA19089.hp1	intron_variant	MODIFIER	c.109+60_109+61delGT c.109+60_109+61delGT		RBMY1B	ENSG00000242875.7	transcript	ENST00000383020.7	protein_coding	2/11					INFO_REALIGN_3_PRIME	chrY	21513474
chrY:21515008	CA CA	C C	1	a0002c0003t0002g0001 a0002c0003t0002g0001	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.213+982delA c.213+982delA		RBMY1B	ENSG00000242875.7	transcript	ENST00000383020.7	protein_coding	3/11					INFO_REALIGN_3_PRIME	chrY	21515008
chrY:21515188	A A	AAAAT AAAAT	1	a0003c0001t0001g0002 a0003c0001t0001g0002	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.213+1162_213+1165d others(6): Show c.213+1162_213+1165dupATAA		RBMY1B	ENSG00000242875.7	transcript	ENST00000383020.7	protein_coding	3/11					INFO_REALIGN_3_PRIME	chrY	21515188
chrY:21516639	AT AT	A A	1	a0002c0003t0002g0001 a0002c0003t0002g0001	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.214-408delT c.214-408delT		RBMY1B	ENSG00000242875.7	transcript	ENST00000383020.7	protein_coding	3/11					INFO_REALIGN_3_PRIME	chrY	21516639
chrY:21517467	C C	G G	3	a0001c0002t0001g0003 a0002c0003t0002g0001 a0003c0001t0001g0002 a0001c0002t0001g0003 a0002c0003t0002g0001 a0003c0001t0001g0002	3	NA18983.hp1 NA18985.hp1 NA19089.hp1 NA18983.hp1 NA18985.hp1 NA19089.hp1	intron_variant	MODIFIER	c.391+233C>G c.391+233C>G		RBMY1B	ENSG00000242875.7	transcript	ENST00000383020.7	protein_coding	4/11						chrY	21517467
chrY:21517976	G G	GA GA	1	a0003c0001t0001g0002 a0003c0001t0001g0002	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.391+748dupA c.391+748dupA		RBMY1B	ENSG00000242875.7	transcript	ENST00000383020.7	protein_coding	4/11					INFO_REALIGN_3_PRIME	chrY	21517976
chrY:21518333	G G	A A	3	a0001c0002t0001g0003 a0002c0003t0002g0001 a0003c0001t0001g0002 a0001c0002t0001g0003 a0002c0003t0002g0001 a0003c0001t0001g0002	3	NA18983.hp1 NA18985.hp1 NA19089.hp1 NA18983.hp1 NA18985.hp1 NA19089.hp1	intron_variant	MODIFIER	c.392-817G>A c.392-817G>A		RBMY1B	ENSG00000242875.7	transcript	ENST00000383020.7	protein_coding	4/11						chrY	21518333
chrY:21519362	C C	G G	3	a0001c0002t0001g0003 a0002c0003t0002g0001 a0003c0001t0001g0002 a0001c0002t0001g0003 a0002c0003t0002g0001 a0003c0001t0001g0002	3	NA18983.hp1 NA18985.hp1 NA19089.hp1 NA18983.hp1 NA18985.hp1 NA19089.hp1	intron_variant	MODIFIER	c.544+60C>G c.544+60C>G		RBMY1B	ENSG00000242875.7	transcript	ENST00000383020.7	protein_coding	5/11						chrY	21519362
chrY:21520012	A A	G G	3	a0001c0002t0001g0003 a0002c0003t0002g0001 a0003c0001t0001g0002 a0001c0002t0001g0003 a0002c0003t0002g0001 a0003c0001t0001g0002	3	NA18983.hp1 NA18985.hp1 NA19089.hp1 NA18983.hp1 NA18985.hp1 NA19089.hp1	intron_variant	MODIFIER	c.544+710A>G c.544+710A>G		RBMY1B	ENSG00000242875.7	transcript	ENST00000383020.7	protein_coding	5/11						chrY	21520012
chrY:21524296	A A	T T	3	a0001c0002t0001g0003 a0002c0003t0002g0001 a0003c0001t0001g0002 a0001c0002t0001g0003 a0002c0003t0002g0001 a0003c0001t0001g0002	3	NA18983.hp1 NA18985.hp1 NA19089.hp1 NA18983.hp1 NA18985.hp1 NA19089.hp1	intron_variant	MODIFIER	c.993-216A>T c.993-216A>T		RBMY1B	ENSG00000242875.7	transcript	ENST00000383020.7	protein_coding	9/11						chrY	21524296
chrY:21524421	C C	T T	1	a0001c0002t0001g0003 a0001c0002t0001g0003	1	NA18983.hp1 NA18983.hp1	intron_variant	MODIFIER	c.993-91C>T c.993-91C>T		RBMY1B	ENSG00000242875.7	transcript	ENST00000383020.7	protein_coding	9/11						chrY	21524421
chrY:21524689	CT CT	C C	3	a0001c0002t0001g0003 a0002c0003t0002g0001 a0003c0001t0001g0002 a0001c0002t0001g0003 a0002c0003t0002g0001 a0003c0001t0001g0002	3	NA18983.hp1 NA18985.hp1 NA19089.hp1 NA18983.hp1 NA18985.hp1 NA19089.hp1	intron_variant	MODIFIER	c.1104-9delT c.1104-9delT		RBMY1B	ENSG00000242875.7	transcript	ENST00000383020.7	protein_coding	10/11					INFO_REALIGN_3_PRIME	chrY	21524689