JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RGPD3_chr2_106398406_106473413	0/0	c0048	5277	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	c0049	5277	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	c0050	5277	1	0	1	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	c0051	5277	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	c0052	5277	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	c0053	5277	1	0	1	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	c0054	5277	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	c0055	5277	1	0	0	0	0	1	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	c0056	5277	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	c0057	5277	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	c0058	5277	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	c0059	5277	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	c0060	5277	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	c0061	5277	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	c0062	5277	1	0	0	0	0	1	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	c0063	5277	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	c0064	5277	1	0	1	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD4_chr2_107821892_107897544	1/0	c0001	5277	106	3	22	75	2	3	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0002	5277	44	6	10	12	4	12	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0003	5277	44	6	0	31	1	6	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0004	5277	28	12	4	3	2	7	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0005	5277	22	8	7	4	1	2	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0006	5277	8	1	4	0	0	3	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0007	5277	8	7	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0008	5277	8	8	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0009	5277	7	0	0	7	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0010	5277	5	0	0	5	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0011	5277	4	0	4	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0012	5277	4	4	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0013	5277	4	4	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0014	5277	3	0	0	3	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0015	5277	3	0	0	3	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0016	5277	3	3	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0017	5277	2	2	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0018	5277	2	0	2	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0019	5277	2	0	0	2	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0020	5277	2	0	0	2	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/1	c0021	5277	2	0	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0022	5277	2	2	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0023	5277	2	2	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0024	5277	2	0	2	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0025	5277	2	2	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0026	5277	2	0	1	0	1	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0027	5277	2	2	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0028	5277	2	0	2	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0029	5277	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0030	5277	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0031	5277	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0032	5277	1	0	0	0	1	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	c0033	5288	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544