JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RGPD5_chr2_109789305_109862705	0/0	c0007	5298	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	c0008	5298	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	c0009	5298	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	c0010	5298	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	c0011	5298	1	0	0	0	1	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	c0012	5298	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	c0013	5298	1	0	1	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	c0014	5298	1	0	0	0	1	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	c0015	5298	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	c0016	5298	1	0	0	0	1	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	c0017	5298	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	c0018	5298	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	c0019	5298	1	0	0	1	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	c0020	5298	1	0	0	1	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	c0021	5308	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD6_chr2_110508802_110582222	0/0	c0001	5298	1	0	1	0	0	0	copy fasta	RGPD6	chr2	110508802	110582222
RGPD6_chr2_110508802_110582222	0/0	c0002	5298	1	0	1	0	0	0	copy fasta	RGPD6	chr2	110508802	110582222
RGPD8_chr2_112363369_112438645	0/0	c0001	5298	104	8	15	72	3	6	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0002	5298	31	2	15	6	3	5	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0003	5298	14	0	0	14	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0004	5298	12	9	3	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0005	5298	10	2	0	8	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0006	5298	9	9	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0007	5298	6	5	1	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0008	5298	5	5	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0009	5298	5	5	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0010	5298	4	0	2	0	2	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0011	5298	2	1	1	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0012	5298	2	0	0	0	0	2	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0013	5298	2	2	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0014	5298	2	2	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0015	5298	2	0	0	2	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0016	5298	2	0	2	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0017	5298	2	0	2	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0018	5298	2	0	0	1	0	1	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0019	5298	2	2	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0020	5298	2	2	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0021	5298	1	0	0	0	0	1	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0022	5298	1	0	0	0	0	1	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0023	5298	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0024	5298	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0025	5298	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0026	5298	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0027	5298	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0028	5298	1	0	0	0	0	1	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0029	5298	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0030	5298	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0031	5298	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0032	5298	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0033	5298	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645