JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RGPD8_chr2_112363369_112438645	0/0	c0034	5298	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0035	5298	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0036	5298	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0037	5298	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0038	5298	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0039	5298	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0040	5298	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0041	5298	1	0	1	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0042	5298	1	0	1	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0043	5298	1	0	0	0	0	1	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0044	5298	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0045	5298	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0046	5298	1	0	0	0	0	1	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0047	5298	1	0	1	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0048	5298	1	0	0	0	0	1	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0049	5298	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0050	5298	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0051	5298	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0052	5298	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0053	5298	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	c0054	5298	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGR_chr10_84240053_84264960	1/0	c0001	876	161	2	38	88	7	25	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/1	c0002	876	149	74	24	34	4	12	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	c0003	876	64	20	6	35	2	1	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	c0004	876	34	1	7	19	1	6	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	c0005	876	12	0	2	5	2	3	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	c0006	876	2	0	2	0	0	0	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	c0007	876	1	0	0	0	0	1	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	c0008	876	1	1	0	0	0	0	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	c0009	876	1	0	1	0	0	0	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	c0010	876	1	0	0	1	0	0	copy fasta	RGR	chr10	84240053	84264960
RGS10_chr10_119494817_119547719	1/0	c0001	546	374	93	57	168	10	45	copy fasta	RGS10	chr10	119494817	119547719
RGS10_chr10_119494817_119547719	0/0	c0002	546	14	1	9	0	1	3	copy fasta	RGS10	chr10	119494817	119547719
RGS10_chr10_119494817_119547719	0/0	c0003	546	4	0	0	4	0	0	copy fasta	RGS10	chr10	119494817	119547719
RGS10_chr10_119494817_119547719	0/0	c0004	546	1	0	0	0	1	0	copy fasta	RGS10	chr10	119494817	119547719
RGS11_chr16_263307_280944	0/0	c0001	1404	175	26	41	75	8	25	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	1/1	c0002	1404	74	7	12	38	7	8	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0003	1404	46	4	12	23	1	6	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0004	1404	31	28	2	0	0	1	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0005	1404	30	0	2	25	1	2	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0006	1404	18	0	1	17	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0007	1404	8	0	1	3	0	4	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0008	1404	7	0	0	6	0	1	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0009	1404	7	7	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0010	1404	5	0	0	5	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0011	1404	5	1	0	3	0	1	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0012	1404	5	0	0	5	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0013	1404	5	5	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0014	1404	4	4	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	c0015	1404	4	0	0	4	0	0	copy fasta	RGS11	chr16	263307	280944