JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RIC3_chr11_8101056_8174025	0/0	c0006	1110	2	2	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	c0007	1110	1	0	0	1	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/1	c0008	1110	1	0	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	c0009	1110	1	0	0	0	0	1	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	c0010	1110	1	1	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	c0011	1110	1	1	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	c0012	1110	1	1	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	c0013	1110	1	1	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC3_chr11_8101056_8174025	0/0	c0014	1110	1	1	0	0	0	0	copy fasta	RIC3	chr11	8101056	8174025
RIC8A_chr11_202708_220113	0/0	c0001	1593	208	25	33	129	3	18	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	1/1	c0002	1596	207	70	42	57	11	25	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	c0003	1596	4	0	0	0	0	4	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	c0004	1596	3	0	3	0	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	c0005	1593	2	0	2	0	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	c0006	1596	1	1	0	0	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	c0007	1593	1	1	0	0	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	c0008	1593	1	0	0	1	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	c0009	1593	1	1	0	0	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	c0010	1581	1	0	0	1	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	c0011	1593	1	0	1	0	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	c0012	1596	1	0	1	0	0	0	copy fasta	RIC8A	chr11	202708	220113
RIC8A_chr11_202708_220113	0/0	c0013	1596	1	0	0	0	0	1	copy fasta	RIC8A	chr11	202708	220113
RIC8B_chr12_106769682_106894316	1/1	c0001	1683	302	72	74	105	16	33	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	c0002	1683	8	5	1	1	0	1	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	c0003	1683	4	3	1	0	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	c0004	1683	2	0	0	2	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	c0005	1683	1	0	0	0	0	1	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	c0006	1683	1	0	0	0	0	1	copy fasta	RIC8B	chr12	106769682	106894316
RICTOR_chr5_38932920_39079399	0/1	c0001	5127	167	46	25	67	7	21	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	c0002	5127	127	22	18	65	7	15	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	c0003	5127	17	5	1	10	0	1	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	c0004	5127	10	1	0	3	0	6	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	1/0	c0005	5127	5	3	1	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	c0006	5127	2	2	0	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	c0007	5127	2	2	0	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	c0008	5127	1	0	0	1	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	c0009	5127	1	0	0	0	0	1	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	c0010	5127	1	0	0	1	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	c0011	5127	1	0	0	1	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	c0012	5127	1	1	0	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	c0013	5127	1	0	0	1	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	c0014	5127	1	0	1	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	c0015	5127	1	0	0	1	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RIDA_chr8_98097344_98122171	1/1	c0001	414	435	86	71	218	14	44	copy fasta	RIDA	chr8	98097344	98122171
RIDA_chr8_98097344_98122171	0/0	c0002	414	21	4	9	0	4	4	copy fasta	RIDA	chr8	98097344	98122171
RIDA_chr8_98097344_98122171	0/0	c0003	414	1	1	0	0	0	0	copy fasta	RIDA	chr8	98097344	98122171
RIDA_chr8_98097344_98122171	0/0	c0004	414	1	1	0	0	0	0	copy fasta	RIDA	chr8	98097344	98122171
RIF1_chr2_151404902_151487172	1/0	c0001	7419	106	34	17	34	6	14	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0002	7419	81	4	22	44	5	6	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/1	c0003	7419	75	7	15	39	6	7	copy fasta	RIF1	chr2	151404902	151487172