JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RIF1_chr2_151404902_151487172	0/0	c0004	7419	36	1	1	30	0	4	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0005	7419	15	14	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0006	7419	7	0	0	7	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0007	7419	6	6	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0008	7419	4	0	0	4	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0009	7419	4	0	0	0	0	4	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0010	7419	4	2	0	0	1	1	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0011	7419	4	0	0	4	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0012	7419	4	3	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0013	7419	3	0	0	3	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0014	7419	3	0	3	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0015	7419	2	2	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0016	7419	2	0	2	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0017	7419	2	0	2	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0018	7419	2	2	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0019	7419	1	1	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0020	7419	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0021	7419	1	0	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0022	7419	1	1	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0023	7419	1	0	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0024	7419	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0025	7419	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0026	7419	1	0	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0027	7419	1	1	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0028	7419	1	0	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0029	7419	1	1	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0030	7419	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0031	7419	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0032	7419	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0033	7419	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0034	7419	1	0	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0035	7419	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0036	7419	1	0	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0037	7419	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	c0038	7419	1	1	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIGI_chr9_32450302_32531196	1/0	c0001	2778	161	44	29	56	6	25	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	c0002	2778	34	3	7	22	0	2	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	c0003	2778	23	1	1	21	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	c0004	2778	22	1	10	7	3	1	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/1	c0005	2778	15	2	7	2	3	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	c0006	2778	15	0	8	0	3	4	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	c0007	2778	15	6	4	4	0	1	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	c0008	2778	14	2	1	9	0	2	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	c0009	2778	8	5	2	1	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	c0010	2778	6	4	0	2	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	c0011	2778	5	3	2	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	c0012	2778	5	5	0	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	c0013	2778	5	5	0	0	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	c0014	2778	4	0	0	4	0	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	c0015	2778	2	0	0	0	0	2	copy fasta	RIGI	chr9	32450302	32531196