JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RLBP1_chr15_89204869_89226579	0/0	c0005	954	1	1	0	0	0	0	copy fasta	RLBP1	chr15	89204869	89226579
RLBP1_chr15_89204869_89226579	0/0	c0006	954	1	0	0	0	0	1	copy fasta	RLBP1	chr15	89204869	89226579
RLBP1_chr15_89204869_89226579	0/0	c0007	954	1	1	0	0	0	0	copy fasta	RLBP1	chr15	89204869	89226579
RLF_chr1_40156387_40245921	1/1	c0001	5745	196	42	28	89	7	28	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0002	5745	57	24	8	17	6	2	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0003	5745	16	15	1	0	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0004	5745	15	1	0	6	0	8	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0005	5745	13	0	1	12	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0006	5745	11	0	0	11	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0007	5745	4	4	0	0	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0008	5745	3	0	0	3	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0009	5745	3	1	2	0	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0010	5745	2	2	0	0	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0011	5745	2	2	0	0	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0012	5745	2	2	0	0	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0013	5745	2	0	0	1	0	1	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0014	5745	2	2	0	0	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0015	5745	1	0	0	1	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0016	5745	1	1	0	0	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0017	5745	1	0	0	0	0	1	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0018	5745	1	0	0	1	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0019	5745	1	0	0	1	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0020	5745	1	0	0	1	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0021	5745	1	0	0	0	1	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0022	5745	1	1	0	0	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0023	5745	1	1	0	0	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	c0024	5745	1	0	0	1	0	0	copy fasta	RLF	chr1	40156387	40245921
RLIG1_chr12_88030536_88055160	1/0	c0001	978	199	78	34	72	4	10	copy fasta	RLIG1	chr12	88030536	88055160
RLIG1_chr12_88030536_88055160	0/1	c0002	978	150	12	29	86	6	16	copy fasta	RLIG1	chr12	88030536	88055160
RLIG1_chr12_88030536_88055160	0/0	c0003	978	4	0	0	4	0	0	copy fasta	RLIG1	chr12	88030536	88055160
RLIG1_chr12_88030536_88055160	0/0	c0004	978	3	0	3	0	0	0	copy fasta	RLIG1	chr12	88030536	88055160
RLIM_chrX_74577976_74619624	1/1	c0001	1875	202	37	48	85	7	23	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	c0002	1875	21	12	0	3	0	6	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	c0003	1875	5	4	0	0	0	1	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	c0004	1875	4	4	0	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	c0005	1875	3	3	0	0	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	c0006	1875	1	0	0	1	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	c0007	1857	1	0	0	1	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLN1_chr9_5329930_5344876	1/1	c0001	558	223	50	44	94	13	20	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	c0002	558	177	20	32	99	3	23	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	c0003	558	17	9	1	2	0	5	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	c0004	558	15	2	0	13	0	0	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	c0005	558	6	6	0	0	0	0	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	c0006	558	3	3	0	0	0	0	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	c0007	558	2	1	1	0	0	0	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	c0008	558	1	0	0	1	0	0	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	c0009	558	1	0	0	1	0	0	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	c0010	558	1	0	0	1	0	0	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	c0011	558	1	1	0	0	0	0	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	c0012	558	1	0	0	1	0	0	copy fasta	RLN1	chr9	5329930	5344876