JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RPS4X_chrX_72267042_72282248	0/0	c0002	792	57	10	28	1	7	11	copy fasta	RPS4X	chrX	72267042	72282248
RPS4X_chrX_72267042_72282248	0/0	c0003	792	2	2	0	0	0	0	copy fasta	RPS4X	chrX	72267042	72282248
RPS4X_chrX_72267042_72282248	0/0	c0004	795	1	0	0	1	0	0	copy fasta	RPS4X	chrX	72267042	72282248
RPS4X_chrX_72267042_72282248	0/0	c0005	793	1	0	0	1	0	0	copy fasta	RPS4X	chrX	72267042	72282248
RPS4X_chrX_72267042_72282248	0/0	c0006	792	1	0	0	1	0	0	copy fasta	RPS4X	chrX	72267042	72282248
RPS4Y1_chrY_2836602_2872268	1/1	c0001	792	121	18	20	60	5	16	copy fasta	RPS4Y1	chrY	2836602	2872268
RPS4Y1_chrY_2836602_2872268	0/0	c0002	792	7	0	0	7	0	0	copy fasta	RPS4Y1	chrY	2836602	2872268
RPS4Y1_chrY_2836602_2872268	0/0	c0003	792	1	0	0	1	0	0	copy fasta	RPS4Y1	chrY	2836602	2872268
RPS4Y2_chrY_20751108_20786032	1/1	c0001	792	126	17	20	69	3	15	copy fasta	RPS4Y2	chrY	20751108	20786032
RPS4Y2_chrY_20751108_20786032	0/0	c0002	792	2	0	0	1	1	0	copy fasta	RPS4Y2	chrY	20751108	20786032
RPS4Y2_chrY_20751108_20786032	0/0	c0003	792	2	0	0	0	1	1	copy fasta	RPS4Y2	chrY	20751108	20786032
RPS4Y2_chrY_20751108_20786032	0/0	c0004	792	1	1	0	0	0	0	copy fasta	RPS4Y2	chrY	20751108	20786032
RPS5_chr19_58382269_58399804	1/0	c0001	615	350	92	70	130	15	42	copy fasta	RPS5	chr19	58382269	58399804
RPS5_chr19_58382269_58399804	0/0	c0002	615	79	4	11	60	3	1	copy fasta	RPS5	chr19	58382269	58399804
RPS5_chr19_58382269_58399804	0/1	c0003	615	2	0	1	0	0	0	copy fasta	RPS5	chr19	58382269	58399804
RPS5_chr19_58382269_58399804	0/0	c0004	615	1	0	0	0	0	1	copy fasta	RPS5	chr19	58382269	58399804
RPS6KA1_chr1_26524761_26580025	0/0	c0001	2208	137	38	26	53	3	17	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/1	c0002	2208	76	41	19	1	9	5	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	c0003	2208	65	1	14	34	1	15	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	c0004	2208	19	3	6	5	1	4	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	c0005	2208	9	0	0	9	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	c0006	2208	8	0	0	8	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	1/0	c0007	2208	4	2	1	0	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	c0008	2208	2	2	0	0	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	c0009	2208	2	2	0	0	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	c0010	2208	1	0	0	1	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	c0011	2208	1	1	0	0	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	c0012	2208	1	0	0	1	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	c0013	2208	1	0	0	1	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	c0014	2208	1	1	0	0	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	c0015	2208	1	1	0	0	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	c0016	2208	1	0	0	0	0	1	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	c0017	2208	1	0	0	1	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA2_chr6_166404364_166632251	0/0	c0001	2202	41	1	15	19	1	5	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0002	2202	30	0	9	18	1	2	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/1	c0003	2202	18	2	1	12	0	2	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0004	2202	11	5	3	3	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0005	2202	10	0	6	4	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0006	2202	9	9	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0007	2202	9	5	2	2	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0008	2202	7	4	0	1	1	1	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0009	2202	7	3	4	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0010	2202	6	5	1	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0011	2202	6	1	0	4	1	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0012	2202	5	0	0	5	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0013	2202	5	2	3	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0014	2202	5	0	0	2	0	3	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0015	2202	4	4	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	1/0	c0016	2202	4	1	2	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0017	2202	4	4	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251