JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RPSA2_chr19_23758004_23833868	0/0	c0015	888	1	0	0	0	0	1	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	c0016	888	1	1	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	c0017	888	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	c0018	888	1	0	1	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA_chr3_39401720_39417542	1/1	c0001	888	274	86	45	103	13	25	copy fasta	RPSA	chr3	39401720	39417542
RPSA_chr3_39401720_39417542	0/0	c0002	888	109	8	21	64	5	11	copy fasta	RPSA	chr3	39401720	39417542
RPSA_chr3_39401720_39417542	0/0	c0003	888	1	0	0	1	0	0	copy fasta	RPSA	chr3	39401720	39417542
RPTN_chr1_152148595_152164228	1/1	c0001	2355	244	60	25	121	9	27	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0002	2319	102	13	24	55	0	10	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0003	2319	19	1	8	1	4	5	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0004	2355	16	1	11	0	2	2	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0005	2355	6	0	0	6	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0006	2319	4	0	4	0	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0007	2319	4	4	0	0	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0008	2355	4	1	2	1	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0009	2319	2	0	0	2	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0010	2319	2	0	2	0	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0011	2355	2	0	0	0	2	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0012	2355	2	2	0	0	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0013	2355	1	0	0	1	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0014	2355	1	1	0	0	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0015	2319	1	0	0	0	1	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0016	2277	1	0	0	1	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0017	2319	1	0	0	1	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0018	2355	1	0	0	1	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0019	2355	1	1	0	0	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0020	2355	1	1	0	0	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0021	2355	1	1	0	0	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0022	2355	1	0	0	1	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0023	2247	1	1	0	0	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0024	2355	1	0	0	0	0	1	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0025	2355	1	0	0	0	0	1	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0026	2319	1	0	0	1	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	c0027	2355	1	1	0	0	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTOR_chr17_80539838_80971368	0/1	c0001	4008	9	1	3	3	0	1	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0002	4008	8	0	1	7	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0003	4008	8	0	2	2	0	4	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	1/0	c0004	4008	7	1	1	2	2	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0005	4008	6	6	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0006	4008	6	4	1	1	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0007	4008	5	5	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0008	4008	5	3	0	2	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0009	4008	5	5	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0010	4008	5	0	2	0	1	2	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0011	4008	4	3	1	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0012	4008	4	2	2	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0013	4008	4	0	1	2	0	1	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0014	4008	4	0	2	0	2	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0015	4008	3	1	2	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0016	4008	3	3	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368