JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RSBN1L_chr7_77691459_77788022	0/1	c0001	2541	200	70	30	64	12	23	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	1/0	c0002	2541	115	8	29	50	6	21	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	c0003	2541	9	8	1	0	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	c0004	2541	4	0	4	0	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	c0005	2541	1	0	0	0	0	1	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	c0006	2541	1	0	0	1	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	c0007	2541	1	0	0	0	0	1	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	c0008	2541	1	0	0	1	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	c0009	2541	1	1	0	0	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	c0010	2541	1	1	0	0	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	c0011	2541	1	1	0	0	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	c0012	2541	1	1	0	0	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1_chr1_113756832_113817476	1/1	c0001	2409	274	67	54	107	13	31	copy fasta	RSBN1	chr1	113756832	113817476
RSBN1_chr1_113756832_113817476	0/0	c0002	2409	57	0	12	39	1	5	copy fasta	RSBN1	chr1	113756832	113817476
RSBN1_chr1_113756832_113817476	0/0	c0003	2409	3	3	0	0	0	0	copy fasta	RSBN1	chr1	113756832	113817476
RSBN1_chr1_113756832_113817476	0/0	c0004	2409	3	0	0	3	0	0	copy fasta	RSBN1	chr1	113756832	113817476
RSBN1_chr1_113756832_113817476	0/0	c0005	2409	2	2	0	0	0	0	copy fasta	RSBN1	chr1	113756832	113817476
RSBN1_chr1_113756832_113817476	0/0	c0006	2409	1	0	0	1	0	0	copy fasta	RSBN1	chr1	113756832	113817476
RSC1A1_chr1_15654713_15667033	1/1	c0001	1854	251	50	50	114	11	24	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	c0002	1854	85	37	20	15	1	12	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	c0003	1854	6	3	1	0	2	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	c0004	1854	3	0	1	0	1	1	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	c0005	1854	3	0	0	3	0	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	c0006	1854	2	2	0	0	0	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	c0007	1854	2	2	0	0	0	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	c0008	1854	2	0	0	0	0	2	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	c0009	1854	1	1	0	0	0	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	c0010	1854	1	1	0	0	0	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	c0011	1854	1	1	0	0	0	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	c0012	1854	1	0	0	1	0	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	c0013	1854	1	0	0	1	0	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	c0014	1854	1	0	0	0	1	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	c0015	1854	1	0	0	0	0	1	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	c0016	1854	1	1	0	0	0	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSF1_chr11_77655009_77825722	1/1	c0001	4326	211	50	30	101	10	18	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	c0002	4326	78	24	12	41	1	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	c0003	4326	40	3	13	8	4	12	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	c0004	4326	5	0	0	5	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	c0005	4326	3	3	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	c0006	4326	2	2	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	c0007	4326	2	0	0	2	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	c0008	4326	1	1	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	c0009	4326	1	1	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	c0010	4326	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	c0011	4326	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	c0012	4326	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	c0013	4326	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	c0014	4326	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	c0015	4326	1	0	0	0	1	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	c0016	4326	1	1	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722