JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RSF1_chr11_77655009_77825722	0/0	c0017	4326	1	0	1	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	c0018	4326	1	1	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSKR_chr17_28602963_28619185	1/1	c0001	1233	353	84	70	148	5	44	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	c0002	1233	2	0	0	1	0	1	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	c0003	1233	2	0	0	2	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	c0004	1233	1	0	0	0	0	1	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	c0005	1233	1	0	0	1	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	c0006	1233	1	1	0	0	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	c0007	1233	1	0	0	0	1	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	c0008	1233	1	1	0	0	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSL1D1_chr16_11828850_11856542	0/1	c0001	1473	199	72	47	40	11	28	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	1/0	c0002	1473	116	2	16	77	4	16	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	c0003	1473	72	14	15	42	0	1	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	c0004	1473	5	0	0	5	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	c0005	1473	2	0	0	2	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	c0006	1473	2	0	2	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	c0007	1473	2	0	0	2	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	c0008	1473	2	2	0	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	c0009	1473	2	2	0	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	c0010	1473	1	0	1	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	c0011	1473	1	0	0	0	0	1	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	c0012	1473	1	0	1	0	0	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL1D1_chr16_11828850_11856542	0/0	c0013	1473	1	0	0	0	1	0	copy fasta	RSL1D1	chr16	11828850	11856542
RSL24D1_chr15_55175806_55201941	1/1	c0001	492	200	29	33	99	12	25	copy fasta	RSL24D1	chr15	55175806	55201941
RSL24D1_chr15_55175806_55201941	0/0	c0002	492	125	66	15	29	4	11	copy fasta	RSL24D1	chr15	55175806	55201941
RSL24D1_chr15_55175806_55201941	0/0	c0003	492	1	1	0	0	0	0	copy fasta	RSL24D1	chr15	55175806	55201941
RSPH10B2_chr7_6749103_6803765	0/0	c0001	2613	30	8	7	13	0	2	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0002	2613	14	1	2	6	0	5	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0003	2613	13	1	3	4	1	4	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0004	2613	8	1	1	3	0	3	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0005	2613	7	2	1	1	0	3	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0006	2613	4	0	0	3	0	1	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0007	2613	3	1	1	1	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0008	2613	3	0	1	1	1	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0009	2613	2	1	0	1	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0010	2613	2	0	0	0	0	2	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0011	2613	2	1	0	1	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0012	2613	2	0	1	0	0	1	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0013	2613	1	1	0	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0014	2613	1	1	0	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0015	2613	1	0	1	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0016	2613	1	1	0	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0017	2613	1	0	0	1	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0018	2613	1	0	1	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0019	2613	1	1	0	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0020	2613	1	1	0	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0021	2613	1	0	1	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0022	2613	1	0	1	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0023	2613	1	1	0	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0024	2613	1	1	0	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765