JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RTL1_chr14_100874753_100908722	0/0	c0037	4077	1	1	0	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0038	4077	1	1	0	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL3_chrX_78651068_78664328	1/1	c0001	1428	286	55	57	140	9	23	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	c0002	1428	17	8	2	1	4	2	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	c0003	1428	5	3	2	0	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	c0004	1428	4	0	0	4	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	c0005	1428	2	0	0	2	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	c0006	1428	2	1	1	0	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	c0007	1428	1	0	1	0	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	c0008	1427	1	0	1	0	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	c0009	1428	1	0	0	0	0	1	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	c0010	1428	1	0	0	1	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	c0011	1428	1	1	0	0	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	c0012	1428	1	0	1	0	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL4_chrX_112078016_112462514	1/1	c0001	933	59	5	11	31	0	10	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	c0002	933	52	23	3	21	2	3	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	c0003	933	9	9	0	0	0	0	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	c0004	933	8	2	3	0	1	2	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	c0005	933	4	0	2	0	2	0	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	c0006	933	1	1	0	0	0	0	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	c0007	933	1	0	0	0	0	1	copy fasta	RTL4	chrX	112078016	112462514
RTL5_chrX_72122110_72136915	1/1	c0001	1710	135	49	7	61	0	16	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	c0002	1710	79	1	10	65	0	3	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	c0003	1710	52	4	27	5	7	9	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	c0004	1710	21	4	3	10	0	4	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	c0005	1710	8	7	1	0	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	c0006	1710	5	4	1	0	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	c0007	1710	4	4	0	0	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	c0008	1709	1	0	0	1	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	c0009	1711	1	0	0	1	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	c0010	1710	1	1	0	0	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	c0011	1711	1	0	0	1	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL6_chr22_44487583_44503233	1/1	c0001	720	402	94	64	182	16	44	copy fasta	RTL6	chr22	44487583	44503233
RTL8A_chrX_135045932_135057135	0/0	c0001	342	227	66	42	89	6	24	copy fasta	RTL8A	chrX	135045932	135057135
RTL8A_chrX_135045932_135057135	1/1	c0002	342	90	6	16	55	1	10	copy fasta	RTL8A	chrX	135045932	135057135
RTL8A_chrX_135045932_135057135	0/0	c0003	342	1	1	0	0	0	0	copy fasta	RTL8A	chrX	135045932	135057135
RTL8B_chrX_135015513_135027542	1/1	c0001	342	289	72	50	125	10	30	copy fasta	RTL8B	chrX	135015513	135027542
RTL8B_chrX_135015513_135027542	0/0	c0002	342	3	2	1	0	0	0	copy fasta	RTL8B	chrX	135015513	135027542
RTL8B_chrX_135015513_135027542	0/0	c0003	343	2	0	0	2	0	0	copy fasta	RTL8B	chrX	135015513	135027542
RTL8B_chrX_135015513_135027542	0/0	c0004	342	1	0	0	0	1	0	copy fasta	RTL8B	chrX	135015513	135027542
RTL8C_chrX_135027355_135038546	1/1	c0001	342	297	74	51	135	7	28	copy fasta	RTL8C	chrX	135027355	135038546
RTL8C_chrX_135027355_135038546	0/0	c0002	344	1	0	0	1	0	0	copy fasta	RTL8C	chrX	135027355	135038546
RTL9_chrX_110353848_110461334	1/1	c0001	4167	101	4	14	67	3	11	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	c0002	4167	43	32	4	1	4	2	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	c0003	4167	6	6	0	0	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	c0004	4167	3	2	1	0	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	c0005	4167	3	3	0	0	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	c0006	4167	2	0	0	0	0	2	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	c0007	4167	1	1	0	0	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	c0008	4167	1	1	0	0	0	0	copy fasta	RTL9	chrX	110353848	110461334