JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RTL9_chrX_110353848_110461334	0/0	c0009	4167	1	1	0	0	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	c0010	4167	1	0	1	0	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	c0011	4167	1	0	0	1	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	c0012	4167	1	0	1	0	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	c0013	4167	1	0	0	0	0	1	copy fasta	RTL9	chrX	110353848	110461334
RTN1_chr14_59590983_59875776	0/1	c0001	2331	155	45	29	58	12	10	copy fasta	RTN1	chr14	59590983	59875776
RTN1_chr14_59590983_59875776	0/0	c0002	2331	5	4	1	0	0	0	copy fasta	RTN1	chr14	59590983	59875776
RTN1_chr14_59590983_59875776	1/0	c0003	2331	4	3	0	0	0	0	copy fasta	RTN1	chr14	59590983	59875776
RTN1_chr14_59590983_59875776	0/0	c0004	2331	3	3	0	0	0	0	copy fasta	RTN1	chr14	59590983	59875776
RTN1_chr14_59590983_59875776	0/0	c0005	2331	1	1	0	0	0	0	copy fasta	RTN1	chr14	59590983	59875776
RTN1_chr14_59590983_59875776	0/0	c0006	2331	1	1	0	0	0	0	copy fasta	RTN1	chr14	59590983	59875776
RTN1_chr14_59590983_59875776	0/0	c0007	2331	1	1	0	0	0	0	copy fasta	RTN1	chr14	59590983	59875776
RTN1_chr14_59590983_59875776	0/0	c0008	2331	1	1	0	0	0	0	copy fasta	RTN1	chr14	59590983	59875776
RTN1_chr14_59590983_59875776	0/0	c0009	2331	1	1	0	0	0	0	copy fasta	RTN1	chr14	59590983	59875776
RTN2_chr19_45480294_45502047	1/1	c0001	1638	343	69	66	154	14	38	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	c0002	1638	64	19	9	29	2	5	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	c0003	1638	12	0	8	4	0	0	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	c0004	1638	1	1	0	0	0	0	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	c0005	1638	1	1	0	0	0	0	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	c0006	1638	1	0	0	0	0	1	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	c0007	1638	1	0	0	0	0	1	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	c0008	1638	1	0	0	0	0	1	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	c0009	1638	1	0	0	1	0	0	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	c0010	1638	1	1	0	0	0	0	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	c0011	1638	1	0	0	1	0	0	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	c0012	1638	1	0	0	1	0	0	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	c0013	1638	1	0	0	1	0	0	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	c0014	1638	1	1	0	0	0	0	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	c0015	1638	1	0	0	1	0	0	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	c0016	1638	1	0	1	0	0	0	copy fasta	RTN2	chr19	45480294	45502047
RTN3_chr11_63676500_63764882	0/1	c0001	3099	86	17	32	17	7	12	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	1/0	c0002	3099	67	51	8	2	3	2	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	0/0	c0003	3099	11	1	2	0	0	8	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	0/0	c0004	3099	4	4	0	0	0	0	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	0/0	c0005	3099	1	0	0	1	0	0	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	0/0	c0006	3099	1	1	0	0	0	0	copy fasta	RTN3	chr11	63676500	63764882
RTN4IP1_chr6_106565771_106634498	1/1	c0001	1191	182	27	37	76	11	29	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	c0002	1191	78	12	19	43	2	2	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	c0003	1191	67	30	6	27	1	3	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	c0004	1191	56	14	8	34	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	c0005	1191	5	5	0	0	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	c0006	1191	2	0	0	0	0	2	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	c0007	1191	1	1	0	0	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	c0008	1191	1	1	0	0	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	c0009	1191	1	1	0	0	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	c0010	1191	1	0	0	1	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	c0011	1191	1	0	0	1	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	c0012	1191	1	1	0	0	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4RL1_chr17_1929677_2030334	0/0	c0001	1326	226	56	46	88	12	24	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	1/1	c0002	1326	121	27	20	46	5	21	copy fasta	RTN4RL1	chr17	1929677	2030334