JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SAAL1_chr11_18075292_18111082	0/0	c0019	1425	1	1	0	0	0	0	copy fasta	SAAL1	chr11	18075292	18111082
SAC3D1_chr11_65036210_65049828	0/0	c0001	1077	140	14	13	92	5	16	copy fasta	SAC3D1	chr11	65036210	65049828
SAC3D1_chr11_65036210_65049828	0/1	c0002	1077	129	46	33	32	10	7	copy fasta	SAC3D1	chr11	65036210	65049828
SAC3D1_chr11_65036210_65049828	0/0	c0003	1077	39	13	8	6	1	11	copy fasta	SAC3D1	chr11	65036210	65049828
SAC3D1_chr11_65036210_65049828	0/0	c0004	1077	28	16	3	8	0	1	copy fasta	SAC3D1	chr11	65036210	65049828
SAC3D1_chr11_65036210_65049828	0/0	c0005	1077	7	6	1	0	0	0	copy fasta	SAC3D1	chr11	65036210	65049828
SAC3D1_chr11_65036210_65049828	1/0	c0006	1077	4	3	0	0	0	0	copy fasta	SAC3D1	chr11	65036210	65049828
SAC3D1_chr11_65036210_65049828	0/0	c0007	1077	1	0	0	0	0	1	copy fasta	SAC3D1	chr11	65036210	65049828
SAC3D1_chr11_65036210_65049828	0/0	c0008	1077	1	1	0	0	0	0	copy fasta	SAC3D1	chr11	65036210	65049828
SAC3D1_chr11_65036210_65049828	0/0	c0009	1077	1	0	0	1	0	0	copy fasta	SAC3D1	chr11	65036210	65049828
SAC3D1_chr11_65036210_65049828	0/0	c0010	1077	1	0	0	1	0	0	copy fasta	SAC3D1	chr11	65036210	65049828
SAC3D1_chr11_65036210_65049828	0/0	c0011	1077	1	1	0	0	0	0	copy fasta	SAC3D1	chr11	65036210	65049828
SACM1L_chr3_45684396_45750409	1/0	c0001	1764	155	28	23	82	6	15	copy fasta	SACM1L	chr3	45684396	45750409
SACM1L_chr3_45684396_45750409	0/1	c0002	1764	141	35	31	53	10	11	copy fasta	SACM1L	chr3	45684396	45750409
SACM1L_chr3_45684396_45750409	0/0	c0003	1764	54	17	15	18	0	4	copy fasta	SACM1L	chr3	45684396	45750409
SACM1L_chr3_45684396_45750409	0/0	c0004	1764	2	2	0	0	0	0	copy fasta	SACM1L	chr3	45684396	45750409
SACM1L_chr3_45684396_45750409	0/0	c0005	1764	1	0	1	0	0	0	copy fasta	SACM1L	chr3	45684396	45750409
SACM1L_chr3_45684396_45750409	0/0	c0006	1764	1	0	0	1	0	0	copy fasta	SACM1L	chr3	45684396	45750409
SACS_chr13_23323830_23438702	0/0	c0001	13740	79	6	21	41	3	8	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/1	c0002	13740	78	9	27	28	4	9	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0003	13740	44	29	11	2	1	1	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0004	13740	32	0	0	29	0	3	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0005	13740	30	0	5	24	0	1	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0006	13740	13	0	2	9	1	1	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0007	13740	11	0	2	1	3	5	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	1/0	c0008	13740	9	8	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0009	13740	5	5	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0010	13740	3	3	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0011	13740	3	3	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0012	13740	2	0	1	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0013	13740	2	0	2	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0014	13740	2	1	1	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0015	13740	2	0	1	0	0	1	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0016	13740	2	2	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0017	13740	2	0	0	2	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0018	13740	2	2	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0019	13740	2	2	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0020	13740	2	2	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0021	13740	2	0	0	2	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0022	13740	2	0	0	0	0	2	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0023	13740	2	2	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0024	13740	2	0	0	2	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0025	13740	2	0	0	2	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0026	13740	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0027	13740	1	0	1	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0028	13740	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0029	13740	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0030	13740	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0031	13740	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0032	13740	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702