JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SACS_chr13_23323830_23438702	0/0	c0033	13740	1	0	1	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0034	13740	1	0	1	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0035	13740	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0036	13740	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0037	13740	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0038	13740	1	0	0	0	0	1	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0039	13740	1	0	1	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0040	13740	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0041	13740	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0042	13740	1	0	1	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0043	13740	1	0	1	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0044	13740	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0045	13740	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0046	13740	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0047	13740	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0048	13740	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0049	13740	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0050	13740	1	0	0	0	0	1	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0051	13740	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0052	13740	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0053	13740	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0054	13740	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0055	13740	1	0	0	0	0	1	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0056	13740	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0057	13740	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0058	13740	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0059	13740	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0060	13740	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0061	13740	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0062	13740	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0063	13740	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0064	13740	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0065	13740	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0066	13740	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0067	13740	1	0	1	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	c0068	13740	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SAE1_chr19_47125835_47215636	1/1	c0001	1041	353	83	65	152	9	42	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	c0002	1041	13	0	0	13	0	0	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	c0003	1041	3	0	1	0	0	2	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	c0004	1041	3	0	1	0	1	1	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	c0005	1041	2	0	0	2	0	0	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	c0006	1041	1	0	1	0	0	0	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	c0007	1041	1	0	0	0	0	1	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	c0008	1041	1	1	0	0	0	0	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	c0009	1041	1	0	0	1	0	0	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	c0010	1041	1	1	0	0	0	0	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	c0011	1041	1	1	0	0	0	0	copy fasta	SAE1	chr19	47125835	47215636
SAFB2_chr19_5581999_5627776	1/1	c0001	2862	333	84	67	126	16	38	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	c0002	2862	3	3	0	0	0	0	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	c0003	2862	2	0	0	2	0	0	copy fasta	SAFB2	chr19	5581999	5627776