JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SAFB2_chr19_5581999_5627776	0/0	c0004	2862	2	0	2	0	0	0	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	c0005	2862	1	0	0	1	0	0	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	c0006	2862	1	0	0	0	0	1	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	c0007	2862	1	0	0	1	0	0	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	c0008	2862	1	1	0	0	0	0	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	c0009	2862	1	0	1	0	0	0	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	c0010	2862	1	0	0	1	0	0	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	c0011	2862	1	0	0	0	0	1	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	c0012	2862	1	0	1	0	0	0	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	c0013	2862	1	0	1	0	0	0	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	c0014	2861	1	0	0	1	0	0	copy fasta	SAFB2	chr19	5581999	5627776
SAFB_chr19_5618083_5673478	1/1	c0001	2754	253	65	58	80	8	40	copy fasta	SAFB	chr19	5618083	5673478
SAFB_chr19_5618083_5673478	0/0	c0002	2754	18	10	3	5	0	0	copy fasta	SAFB	chr19	5618083	5673478
SAFB_chr19_5618083_5673478	0/0	c0003	2754	2	1	0	0	1	0	copy fasta	SAFB	chr19	5618083	5673478
SAFB_chr19_5618083_5673478	0/0	c0004	2754	2	0	0	1	1	0	copy fasta	SAFB	chr19	5618083	5673478
SAFB_chr19_5618083_5673478	0/0	c0005	2754	1	0	0	1	0	0	copy fasta	SAFB	chr19	5618083	5673478
SAFB_chr19_5618083_5673478	0/0	c0006	2754	1	0	0	1	0	0	copy fasta	SAFB	chr19	5618083	5673478
SAFB_chr19_5618083_5673478	0/0	c0007	2754	1	0	1	0	0	0	copy fasta	SAFB	chr19	5618083	5673478
SAFB_chr19_5618083_5673478	0/0	c0008	2754	1	0	0	1	0	0	copy fasta	SAFB	chr19	5618083	5673478
SAFB_chr19_5618083_5673478	0/0	c0009	2754	1	0	1	0	0	0	copy fasta	SAFB	chr19	5618083	5673478
SAFB_chr19_5618083_5673478	0/0	c0010	2754	1	0	0	1	0	0	copy fasta	SAFB	chr19	5618083	5673478
SAFB_chr19_5618083_5673478	0/0	c0011	2754	1	0	1	0	0	0	copy fasta	SAFB	chr19	5618083	5673478
SAGE1_chrX_135888716_135918062	1/0	c0001	2715	184	48	26	85	6	18	copy fasta	SAGE1	chrX	135888716	135918062
SAGE1_chrX_135888716_135918062	0/1	c0002	2715	29	3	7	14	3	1	copy fasta	SAGE1	chrX	135888716	135918062
SAGE1_chrX_135888716_135918062	0/0	c0003	2715	18	2	3	12	0	1	copy fasta	SAGE1	chrX	135888716	135918062
SAGE1_chrX_135888716_135918062	0/0	c0004	2715	7	7	0	0	0	0	copy fasta	SAGE1	chrX	135888716	135918062
SAGE1_chrX_135888716_135918062	0/0	c0005	2715	3	3	0	0	0	0	copy fasta	SAGE1	chrX	135888716	135918062
SAGE1_chrX_135888716_135918062	0/0	c0006	2715	2	2	0	0	0	0	copy fasta	SAGE1	chrX	135888716	135918062
SAGE1_chrX_135888716_135918062	0/0	c0007	2715	1	1	0	0	0	0	copy fasta	SAGE1	chrX	135888716	135918062
SAGE1_chrX_135888716_135918062	0/0	c0008	2715	1	1	0	0	0	0	copy fasta	SAGE1	chrX	135888716	135918062
SAGE1_chrX_135888716_135918062	0/0	c0009	2715	1	0	0	1	0	0	copy fasta	SAGE1	chrX	135888716	135918062
SAGE1_chrX_135888716_135918062	0/0	c0010	2712	1	0	1	0	0	0	copy fasta	SAGE1	chrX	135888716	135918062
SAGE1_chrX_135888716_135918062	0/0	c0011	2843	1	0	1	0	0	0	copy fasta	SAGE1	chrX	135888716	135918062
SAGE1_chrX_135888716_135918062	0/0	c0012	2715	1	0	1	0	0	0	copy fasta	SAGE1	chrX	135888716	135918062
SAGSIN1_chr7_6324411_6353967	1/1	c0001	207	420	96	74	186	18	44	copy fasta	SAGSIN1	chr7	6324411	6353967
SAG_chr2_233302816_233352055	1/1	c0001	1218	170	33	40	81	4	10	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	c0002	1218	97	5	18	58	5	11	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	c0003	1218	25	13	3	5	3	1	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	c0004	1218	22	6	0	12	0	4	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	c0005	1218	19	9	4	4	0	2	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	c0006	1218	6	6	0	0	0	0	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	c0007	1218	5	3	0	1	0	1	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	c0008	1218	5	5	0	0	0	0	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	c0009	1218	4	4	0	0	0	0	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	c0010	1218	4	3	0	1	0	0	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	c0011	1218	2	0	2	0	0	0	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	c0012	1218	1	0	1	0	0	0	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	c0013	1218	1	1	0	0	0	0	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	c0014	1218	1	0	1	0	0	0	copy fasta	SAG	chr2	233302816	233352055
SAG_chr2_233302816_233352055	0/0	c0015	1218	1	0	0	0	0	1	copy fasta	SAG	chr2	233302816	233352055