JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATG2A_chr11_64889546_64922209	0/0	c0041	5817	1	0	1	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0042	5817	1	1	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0043	5817	1	0	1	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0044	5817	1	1	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0045	5828	1	0	0	1	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0046	5817	1	0	1	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0047	5817	1	0	0	1	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	c0048	5817	1	0	0	1	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2B_chr14_96274195_96368341	0/1	c0001	6237	78	14	14	38	3	8	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0002	6237	70	29	12	15	2	12	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0003	6237	59	8	11	28	4	8	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	1/0	c0004	6237	35	0	3	27	0	4	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0005	6237	33	1	5	27	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0006	6237	11	0	0	8	0	3	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0007	6237	8	8	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0008	6237	6	5	1	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0009	6237	6	0	5	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0010	6237	5	4	1	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0011	6237	3	0	3	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0012	6237	3	3	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0013	6237	3	2	1	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0014	6237	3	3	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0015	6237	2	0	0	0	0	2	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0016	6237	2	2	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0017	6237	2	0	0	2	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0018	6237	2	2	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0019	6237	2	1	1	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0020	6237	2	0	2	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0021	6237	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0022	6237	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0023	6237	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0024	6237	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0025	6237	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0026	6237	1	0	1	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0027	6237	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0028	6237	1	0	0	0	0	1	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0029	6237	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0030	6237	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0031	6237	1	0	1	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0032	6237	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0033	6237	1	0	1	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0034	6237	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0035	6237	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0036	6237	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0037	6237	1	0	0	0	1	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0038	6237	1	0	0	0	0	1	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0039	6237	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0040	6237	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	c0041	6237	1	0	0	0	0	1	copy fasta	ATG2B	chr14	96274195	96368341
ATG3_chr3_112527510_112566962	1/1	c0001	945	294	54	50	138	14	36	copy fasta	ATG3	chr3	112527510	112566962