JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCGB2A1_chr11_62203673_62218943	0/0	c0002	288	1	1	0	0	0	0	copy fasta	SCGB2A1	chr11	62203673	62218943
SCGB2A2_chr11_62265158_62278160	1/1	c0001	282	382	89	80	158	18	35	copy fasta	SCGB2A2	chr11	62265158	62278160
SCGB2A2_chr11_62265158_62278160	0/0	c0002	282	2	0	0	2	0	0	copy fasta	SCGB2A2	chr11	62265158	62278160
SCGB2A2_chr11_62265158_62278160	0/0	c0003	282	2	2	0	0	0	0	copy fasta	SCGB2A2	chr11	62265158	62278160
SCGB2A2_chr11_62265158_62278160	0/0	c0004	282	2	0	0	2	0	0	copy fasta	SCGB2A2	chr11	62265158	62278160
SCGB2A2_chr11_62265158_62278160	0/0	c0005	263	1	0	0	0	0	1	copy fasta	SCGB2A2	chr11	62265158	62278160
SCGB2A2_chr11_62265158_62278160	0/0	c0006	282	1	1	0	0	0	0	copy fasta	SCGB2A2	chr11	62265158	62278160
SCGB2B2_chr19_34585644_34682159	1/1	c0001	291	353	66	64	180	10	31	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	c0002	291	14	13	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	c0003	291	1	0	0	0	0	1	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	c0004	291	1	0	1	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB2B2_chr19_34585644_34682159	0/0	c0005	291	1	1	0	0	0	0	copy fasta	SCGB2B2	chr19	34585644	34682159
SCGB3A1_chr5_180585105_180596499	1/1	c0001	315	465	98	80	221	16	48	copy fasta	SCGB3A1	chr5	180585105	180596499
SCGB3A1_chr5_180585105_180596499	0/0	c0002	315	5	0	0	5	0	0	copy fasta	SCGB3A1	chr5	180585105	180596499
SCGB3A2_chr5_147873711_147887191	1/1	c0001	282	392	91	74	168	16	41	copy fasta	SCGB3A2	chr5	147873711	147887191
SCGB3A2_chr5_147873711_147887191	0/0	c0002	282	32	7	0	22	0	3	copy fasta	SCGB3A2	chr5	147873711	147887191
SCGN_chr6_25647215_25706783	1/1	c0001	831	346	76	65	146	17	40	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	c0002	831	6	6	0	0	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	c0003	831	5	5	0	0	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	c0004	831	3	0	0	3	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	c0005	831	2	1	1	0	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	c0006	831	1	1	0	0	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	c0007	831	1	0	0	1	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	c0008	831	1	0	0	0	1	0	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	c0009	831	1	0	0	0	0	1	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	c0010	831	1	0	0	0	0	1	copy fasta	SCGN	chr6	25647215	25706783
SCGN_chr6_25647215_25706783	0/0	c0011	831	1	1	0	0	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCHIP1_chr3_159268244_159902359	0/0	c0001	1464	71	42	13	10	1	5	copy fasta	SCHIP1	chr3	159268244	159902359
SCHIP1_chr3_159268244_159902359	0/0	c0002	1464	25	19	4	0	1	1	copy fasta	SCHIP1	chr3	159268244	159902359
SCHIP1_chr3_159268244_159902359	0/0	c0003	1464	2	2	0	0	0	0	copy fasta	SCHIP1	chr3	159268244	159902359
SCHIP1_chr3_159268244_159902359	0/0	c0004	1464	1	1	0	0	0	0	copy fasta	SCHIP1	chr3	159268244	159902359
SCHIP1_chr3_159268244_159902359	0/0	c0005	1464	1	0	1	0	0	0	copy fasta	SCHIP1	chr3	159268244	159902359
SCIMP_chr17_5203920_5239860	1/0	c0001	438	232	62	23	115	8	23	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/1	c0002	438	112	21	43	26	4	17	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	c0003	438	40	9	4	25	0	2	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	c0004	438	2	0	2	0	0	0	copy fasta	SCIMP	chr17	5203920	5239860
SCIN_chr7_12565720_12665182	1/1	c0001	2148	189	26	33	95	10	23	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	c0002	2148	82	11	20	35	4	12	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	c0003	2148	40	27	3	7	1	2	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	c0004	2148	10	0	7	3	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	c0005	2148	7	3	3	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	c0006	2148	6	0	0	6	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	c0007	2148	6	6	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	c0008	2148	5	0	0	5	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	c0009	2148	4	4	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	c0010	2148	3	0	2	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	c0011	2148	3	3	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	c0012	2148	3	3	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	c0013	2148	2	1	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	c0014	2148	2	2	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182