JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCIN_chr7_12565720_12665182	0/0	c0015	2148	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	c0016	2148	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	c0017	2148	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	c0018	2148	1	0	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	c0019	2148	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	c0020	2148	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	c0021	2148	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	c0022	2148	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	c0023	2148	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	c0024	2148	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCLT1_chr4_128878993_129098539	0/1	c0001	2067	99	22	22	41	2	11	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	c0002	2067	81	30	14	31	3	3	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	c0003	2067	59	0	11	41	2	5	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	c0004	2067	27	3	3	12	4	5	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	c0005	2067	10	0	4	6	0	0	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	c0006	2067	2	0	2	0	0	0	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	1/0	c0007	2067	2	0	0	0	0	1	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	c0008	2067	2	0	1	0	0	1	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	c0009	2067	1	0	1	0	0	0	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	c0010	2067	1	1	0	0	0	0	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	c0011	2067	1	1	0	0	0	0	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	c0012	2067	1	1	0	0	0	0	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	c0013	2067	1	0	0	1	0	0	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	c0014	2067	1	0	0	0	1	0	copy fasta	SCLT1	chr4	128878993	129098539
SCLY_chr2_238056001_238104413	1/1	c0001	1338	148	22	10	94	7	13	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	c0002	1338	80	2	25	43	4	6	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	c0003	1338	57	12	5	37	0	3	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	c0004	1338	29	3	7	4	5	10	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	c0005	1338	21	11	6	3	0	1	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	c0006	1338	19	19	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	c0007	1338	8	8	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	c0008	1338	8	6	2	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	c0009	1338	7	6	1	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	c0010	1338	4	0	2	2	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	c0011	1338	3	0	2	0	0	1	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	c0012	1338	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	c0013	1338	1	1	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	c0014	1338	1	1	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	c0015	1338	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	c0016	1338	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	c0017	1338	1	1	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	c0018	1338	1	0	1	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	c0019	1338	1	0	1	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCMH1_chr1_41022202_41247306	1/1	c0001	2013	299	45	57	146	14	35	copy fasta	SCMH1	chr1	41022202	41247306
SCMH1_chr1_41022202_41247306	0/0	c0002	2013	1	1	0	0	0	0	copy fasta	SCMH1	chr1	41022202	41247306
SCMH1_chr1_41022202_41247306	0/0	c0003	2013	1	0	0	1	0	0	copy fasta	SCMH1	chr1	41022202	41247306
SCMH1_chr1_41022202_41247306	0/0	c0004	2013	1	0	0	0	0	1	copy fasta	SCMH1	chr1	41022202	41247306
SCMH1_chr1_41022202_41247306	0/0	c0005	2013	1	0	0	1	0	0	copy fasta	SCMH1	chr1	41022202	41247306
SCMH1_chr1_41022202_41247306	0/0	c0006	2013	1	0	1	0	0	0	copy fasta	SCMH1	chr1	41022202	41247306
SCML1_chrX_17732493_17759985	1/1	c0001	990	277	70	45	127	7	26	copy fasta	SCML1	chrX	17732493	17759985