JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCN2A_chr2_165234414_165397304	1/1	c0001	6018	209	50	44	84	6	23	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	c0002	6018	97	16	18	47	3	13	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	c0003	6018	28	0	6	18	2	2	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	c0004	6018	5	5	0	0	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	c0005	6018	2	0	1	0	1	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	c0006	6018	2	0	0	2	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	c0007	6018	2	2	0	0	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	c0008	6018	2	1	1	0	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	c0009	6018	1	0	1	0	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	c0010	6018	1	0	0	0	0	1	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	c0011	6018	1	0	0	1	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	c0012	6018	1	1	0	0	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	c0013	6018	1	0	0	1	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	c0014	6018	1	0	1	0	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	c0015	6018	1	0	1	0	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	c0016	6018	1	0	1	0	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	c0017	6018	1	0	0	0	0	1	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	c0018	6018	1	0	0	1	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2A_chr2_165234414_165397304	0/0	c0019	6018	1	1	0	0	0	0	copy fasta	SCN2A	chr2	165234414	165397304
SCN2B_chr11_118157806_118181639	1/1	c0001	648	449	96	80	206	18	47	copy fasta	SCN2B	chr11	118157806	118181639
SCN2B_chr11_118157806_118181639	0/0	c0002	648	1	0	0	0	0	1	copy fasta	SCN2B	chr11	118157806	118181639
SCN3A_chr2_165082526_165209050	0/0	c0001	6003	94	31	17	32	1	13	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	1/1	c0002	6003	84	16	15	37	4	10	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0003	6003	52	0	6	37	3	6	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0004	6003	10	9	0	0	1	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0005	6003	9	9	0	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0006	6000	9	2	2	0	2	3	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0007	6003	8	0	7	0	0	1	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0008	6003	7	3	1	1	0	2	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0009	6003	5	4	1	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0010	6003	5	0	0	5	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0011	6003	4	0	0	4	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0012	6003	3	0	1	0	1	1	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0013	6003	2	0	1	0	0	1	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0014	6003	2	0	0	2	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0015	6000	2	2	0	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0016	6003	1	1	0	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0017	6003	1	1	0	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0018	6003	1	0	0	1	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0019	6003	1	0	0	1	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0020	6003	1	0	1	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0021	6003	1	0	0	1	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0022	6003	1	1	0	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0023	6003	1	0	0	1	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0024	6003	1	0	0	1	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0025	6003	1	0	1	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0026	6003	1	1	0	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0027	6003	1	0	0	1	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0028	6003	1	0	0	0	0	1	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0029	6003	1	0	0	1	0	0	copy fasta	SCN3A	chr2	165082526	165209050