JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCN3A_chr2_165082526_165209050	0/0	c0030	6003	1	0	0	1	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0031	6003	1	0	1	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0032	6000	1	1	0	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3A_chr2_165082526_165209050	0/0	c0033	6000	1	1	0	0	0	0	copy fasta	SCN3A	chr2	165082526	165209050
SCN3B_chr11_123624188_123659624	1/1	c0001	648	420	85	74	203	13	43	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	c0002	648	24	8	8	0	3	5	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	c0003	648	3	3	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	c0004	648	2	2	0	0	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN3B_chr11_123624188_123659624	0/0	c0005	648	1	0	0	1	0	0	copy fasta	SCN3B	chr11	123624188	123659624
SCN4A_chr17_63933554_63977918	0/1	c0001	5511	103	13	22	53	3	11	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0002	5511	76	1	16	47	5	7	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	1/0	c0003	5511	18	9	5	0	1	2	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0004	5511	15	1	3	8	2	1	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0005	5511	10	10	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0006	5511	9	9	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0007	5511	8	1	5	1	1	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0008	5511	6	0	1	5	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0009	5511	5	0	1	3	0	1	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0010	5511	5	5	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0011	5511	4	2	0	1	0	1	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0012	5511	4	0	2	0	2	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0013	5511	4	4	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0014	5511	4	3	1	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0015	5511	4	0	0	4	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0016	5511	3	0	0	1	0	2	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0017	5511	3	3	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0018	5511	3	0	0	3	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0019	5511	2	1	1	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0020	5511	2	0	0	0	0	2	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0021	5511	2	2	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0022	5511	2	1	1	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0023	5511	2	2	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0024	5511	2	0	0	2	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0025	5511	2	1	1	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0026	5511	2	2	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0027	5511	2	0	2	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0028	5511	2	0	1	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0029	5511	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0030	5511	1	0	0	0	0	1	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0031	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0032	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0033	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0034	5511	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0035	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0036	5511	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0037	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0038	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0039	5511	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0040	5511	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	c0041	5511	1	0	1	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918