JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCN5A_chr3_38543062_38654687	0/0	c0054	6051	1	0	0	0	0	1	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0055	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0056	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0057	6051	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0058	6051	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0059	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0060	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0061	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0062	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0063	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0064	6051	1	0	1	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0065	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0066	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0067	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0068	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0069	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0070	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0071	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0072	6051	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0073	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0074	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0075	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0076	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	c0077	6051	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN7A_chr2_166398573_166499249	0/0	c0001	5049	154	29	29	75	3	18	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	1/1	c0002	5049	79	3	17	37	5	15	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0003	5049	24	22	1	1	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0004	5049	20	0	0	20	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0005	5049	14	7	4	0	1	2	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0006	5049	12	3	3	1	0	5	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0007	5049	11	0	4	7	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0008	5049	9	0	4	5	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0009	5049	9	8	1	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0010	5049	8	3	1	0	2	2	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0011	5049	8	0	0	8	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0012	5049	5	2	2	0	1	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0013	5049	5	4	1	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0014	5049	4	0	0	4	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0015	5049	4	0	0	4	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0016	5049	2	0	1	0	0	1	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0017	5049	2	2	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0018	5049	2	0	0	2	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0019	5049	2	0	2	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0020	5049	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0021	5049	1	0	1	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0022	5049	1	0	0	0	0	1	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0023	5049	1	0	0	1	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0024	5049	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0025	5049	1	0	0	0	0	1	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0026	5049	1	0	0	1	0	0	copy fasta	SCN7A	chr2	166398573	166499249