JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCN7A_chr2_166398573_166499249	0/0	c0027	5049	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0028	5049	1	0	0	1	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0029	5049	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0030	5049	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0031	5049	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0032	5049	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0033	5049	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0034	5049	1	0	0	0	0	1	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0035	5049	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0036	5049	1	0	0	0	0	1	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0037	5049	1	0	0	0	0	1	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0038	5049	1	0	0	1	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	c0039	5049	1	0	1	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN8A_chr12_51586233_51817864	0/0	c0001	5943	66	24	6	19	4	13	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/1	c0002	5943	61	14	15	22	4	5	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	1/0	c0003	5943	45	22	10	0	0	12	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	c0004	5943	7	7	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	c0005	5943	5	5	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	c0006	5943	3	2	1	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	c0007	5943	2	2	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	c0008	5942	2	2	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	c0009	5943	2	2	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	c0010	5943	1	1	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	c0011	5943	1	1	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	c0012	5943	1	1	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	c0013	5943	1	1	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	c0014	5943	1	1	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	c0015	5943	1	1	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	c0016	5943	1	1	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	c0017	5943	1	0	0	1	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	0/0	c0018	5943	1	1	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN9A_chr2_166190185_166380944	0/0	c0001	5967	44	2	5	29	1	7	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	c0002	5967	39	10	7	15	2	5	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	c0003	5967	37	7	8	18	2	2	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	c0004	5967	16	2	5	5	1	3	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	c0005	5967	16	3	6	7	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	c0006	5967	10	0	0	8	0	2	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	c0007	5967	8	4	2	2	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	c0008	5967	8	8	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	c0009	5967	7	1	4	0	0	2	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/1	c0010	5967	6	0	4	0	1	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	c0011	5967	5	4	0	1	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	c0012	5967	4	0	0	4	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	c0013	5967	4	0	1	3	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	c0014	5967	4	0	3	1	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	1/0	c0015	5967	4	0	1	1	0	1	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	c0016	5967	4	0	4	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	c0017	5967	3	0	0	3	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	c0018	5967	3	2	0	1	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	c0019	5967	3	1	0	0	0	2	copy fasta	SCN9A	chr2	166190185	166380944