JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCYGR7_chr2_227723335_227733625	0/0	c0027	291	1	0	0	0	0	1	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0028	291	1	1	0	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0029	291	1	0	1	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0030	291	1	1	0	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0031	291	1	1	0	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0032	291	1	0	1	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0033	267	1	1	0	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR7_chr2_227723335_227733625	0/0	c0034	291	1	1	0	0	0	0	copy fasta	SCYGR7	chr2	227723335	227733625
SCYGR8_chr2_227740894_227751220	0/1	c0001	312	302	58	43	175	8	17	copy fasta	SCYGR8	chr2	227740894	227751220
SCYGR8_chr2_227740894_227751220	0/0	c0002	312	73	2	22	20	7	22	copy fasta	SCYGR8	chr2	227740894	227751220
SCYGR8_chr2_227740894_227751220	0/0	c0003	327	31	3	8	13	1	6	copy fasta	SCYGR8	chr2	227740894	227751220
SCYGR8_chr2_227740894_227751220	0/0	c0004	288	20	0	6	11	0	3	copy fasta	SCYGR8	chr2	227740894	227751220
SCYGR8_chr2_227740894_227751220	0/0	c0005	327	14	14	0	0	0	0	copy fasta	SCYGR8	chr2	227740894	227751220
SCYGR8_chr2_227740894_227751220	0/0	c0006	312	9	9	0	0	0	0	copy fasta	SCYGR8	chr2	227740894	227751220
SCYGR8_chr2_227740894_227751220	0/0	c0007	327	3	3	0	0	0	0	copy fasta	SCYGR8	chr2	227740894	227751220
SCYGR8_chr2_227740894_227751220	0/0	c0008	312	3	2	1	0	0	0	copy fasta	SCYGR8	chr2	227740894	227751220
SCYGR8_chr2_227740894_227751220	0/0	c0009	300	1	0	0	1	0	0	copy fasta	SCYGR8	chr2	227740894	227751220
SCYGR8_chr2_227740894_227751220	0/0	c0010	312	1	1	0	0	0	0	copy fasta	SCYGR8	chr2	227740894	227751220
SCYL1_chr11_65520083_65543704	1/1	c0001	2427	267	82	40	104	9	30	copy fasta	SCYL1	chr11	65520083	65543704
SCYL1_chr11_65520083_65543704	0/0	c0002	2427	2	0	1	0	1	0	copy fasta	SCYL1	chr11	65520083	65543704
SCYL1_chr11_65520083_65543704	0/0	c0003	2427	1	1	0	0	0	0	copy fasta	SCYL1	chr11	65520083	65543704
SCYL1_chr11_65520083_65543704	0/0	c0004	2427	1	0	1	0	0	0	copy fasta	SCYL1	chr11	65520083	65543704
SCYL1_chr11_65520083_65543704	0/0	c0005	2445	1	0	1	0	0	0	copy fasta	SCYL1	chr11	65520083	65543704
SCYL1_chr11_65520083_65543704	0/0	c0006	2427	1	0	1	0	0	0	copy fasta	SCYL1	chr11	65520083	65543704
SCYL1_chr11_65520083_65543704	0/0	c0007	2427	1	1	0	0	0	0	copy fasta	SCYL1	chr11	65520083	65543704
SCYL1_chr11_65520083_65543704	0/0	c0008	2427	1	0	0	1	0	0	copy fasta	SCYL1	chr11	65520083	65543704
SCYL1_chr11_65520083_65543704	0/0	c0009	2427	1	0	0	1	0	0	copy fasta	SCYL1	chr11	65520083	65543704
SCYL1_chr11_65520083_65543704	0/0	c0010	2427	1	0	1	0	0	0	copy fasta	SCYL1	chr11	65520083	65543704
SCYL1_chr11_65520083_65543704	0/0	c0011	2427	1	0	1	0	0	0	copy fasta	SCYL1	chr11	65520083	65543704
SCYL2_chr12_100262177_100346715	1/0	c0001	2790	141	40	30	49	4	17	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	c0002	2790	24	17	0	3	2	2	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	c0003	2790	17	4	5	1	4	3	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	c0004	2790	8	0	0	8	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	c0005	2790	7	0	0	7	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	c0006	2790	4	4	0	0	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	c0007	2790	3	3	0	0	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/1	c0008	2790	3	1	1	0	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	c0009	2790	2	0	0	0	2	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	c0010	2790	2	2	0	0	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	c0011	2790	2	0	1	0	1	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	c0012	2790	1	0	0	1	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	c0013	2790	1	0	0	1	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	c0014	2790	1	1	0	0	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	c0015	2790	1	0	0	0	1	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	c0016	2790	1	0	1	0	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	c0017	2790	1	1	0	0	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL2_chr12_100262177_100346715	0/0	c0018	2790	1	1	0	0	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL3_chr1_169844631_169898896	0/1	c0001	2067	254	53	32	132	7	29	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	1/0	c0002	2067	91	6	15	61	3	5	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	c0003	2067	32	14	10	0	4	4	copy fasta	SCYL3	chr1	169844631	169898896