JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SCYL3_chr1_169844631_169898896	0/0	c0004	2067	15	0	5	5	2	3	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	c0005	2067	12	12	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	c0006	2067	3	3	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	c0007	2067	2	2	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	c0008	2067	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	c0009	2067	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	c0010	2067	1	0	0	0	0	1	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	c0011	2067	1	0	1	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	c0012	2067	1	0	1	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	c0013	2067	1	0	0	0	0	1	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	c0014	2067	1	0	0	0	0	1	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	c0015	2067	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	c0016	2067	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SDAD1_chr4_75944915_75995945	1/0	c0001	2064	146	50	23	64	0	8	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	c0002	2064	83	8	20	44	3	8	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	c0003	2064	73	20	12	19	5	17	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/1	c0004	2064	43	0	7	25	4	6	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	c0005	2064	7	0	0	7	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	c0006	2064	6	6	0	0	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	c0007	2064	5	0	0	5	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	c0008	2064	3	0	0	3	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	c0009	2064	2	0	0	2	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	c0010	2064	2	2	0	0	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	c0011	2064	1	0	0	1	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	c0012	2064	1	0	0	0	0	1	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	c0013	2064	1	1	0	0	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	c0014	2064	1	0	0	1	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	c0015	2064	1	0	0	1	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	c0016	2064	1	1	0	0	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDC1_chr2_20195797_20230130	0/0	c0001	933	305	53	46	159	10	37	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/1	c0002	933	55	14	11	15	6	8	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	c0003	933	18	8	6	2	0	2	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	1/0	c0004	933	13	11	1	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	c0005	933	5	5	0	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	c0006	933	3	0	3	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	c0007	933	3	3	0	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	c0008	933	2	1	0	1	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	c0009	933	1	0	0	1	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	c0010	933	1	1	0	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	c0011	933	1	0	0	1	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	c0012	933	1	0	0	1	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	c0013	933	1	0	1	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	c0014	933	1	0	1	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	c0015	933	1	0	1	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	c0016	933	1	0	0	0	0	1	copy fasta	SDC1	chr2	20195797	20230130
SDC2_chr8_96488813_96616790	1/0	c0001	606	158	55	32	49	7	14	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/1	c0002	606	64	31	7	21	1	3	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	c0003	606	51	1	15	22	4	9	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	c0004	606	37	0	6	30	0	1	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	c0005	606	19	1	0	17	0	1	copy fasta	SDC2	chr8	96488813	96616790