JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SERAC1_chr6_158104519_158173262	0/0	c0007	1965	2	0	2	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	c0008	1965	1	1	0	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	c0009	1965	1	0	0	0	0	1	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	c0010	1965	1	1	0	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERBP1_chr1_67402810_67435402	1/1	c0001	1182	361	82	66	150	16	45	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	c0002	1182	2	2	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	c0003	1182	1	0	0	0	0	1	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	c0004	1182	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	c0005	1182	1	0	1	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	c0006	1182	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	c0007	1182	1	0	1	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERF1A_chr5_70895669_70913115	0/0	c0001	189	4	0	0	2	0	2	copy fasta	SERF1A	chr5	70895669	70913115
SERF1B_chr5_70020251_70048113	0/0	c0001	333	218	54	34	104	10	16	copy fasta	SERF1B	chr5	70020251	70048113
SERF2_chr15_43787320_43801079	1/1	c0001	180	392	94	64	178	10	44	copy fasta	SERF2	chr15	43787320	43801079
SERGEF_chr11_17783048_18018047	0/0	c0001	1377	129	52	20	39	3	15	copy fasta	SERGEF	chr11	17783048	18018047
SERGEF_chr11_17783048_18018047	1/1	c0002	1377	59	6	15	25	3	8	copy fasta	SERGEF	chr11	17783048	18018047
SERGEF_chr11_17783048_18018047	0/0	c0003	1377	22	10	4	0	2	6	copy fasta	SERGEF	chr11	17783048	18018047
SERGEF_chr11_17783048_18018047	0/0	c0004	1377	3	3	0	0	0	0	copy fasta	SERGEF	chr11	17783048	18018047
SERGEF_chr11_17783048_18018047	0/0	c0005	1377	3	0	0	3	0	0	copy fasta	SERGEF	chr11	17783048	18018047
SERGEF_chr11_17783048_18018047	0/0	c0006	1377	2	0	2	0	0	0	copy fasta	SERGEF	chr11	17783048	18018047
SERGEF_chr11_17783048_18018047	0/0	c0007	1377	2	2	0	0	0	0	copy fasta	SERGEF	chr11	17783048	18018047
SERGEF_chr11_17783048_18018047	0/0	c0008	1377	1	1	0	0	0	0	copy fasta	SERGEF	chr11	17783048	18018047
SERGEF_chr11_17783048_18018047	0/0	c0009	1377	1	1	0	0	0	0	copy fasta	SERGEF	chr11	17783048	18018047
SERGEF_chr11_17783048_18018047	0/0	c0010	1377	1	0	1	0	0	0	copy fasta	SERGEF	chr11	17783048	18018047
SERGEF_chr11_17783048_18018047	0/0	c0011	1377	1	1	0	0	0	0	copy fasta	SERGEF	chr11	17783048	18018047
SERGEF_chr11_17783048_18018047	0/0	c0012	1377	1	0	0	0	0	1	copy fasta	SERGEF	chr11	17783048	18018047
SERGEF_chr11_17783048_18018047	0/0	c0013	1377	1	0	0	1	0	0	copy fasta	SERGEF	chr11	17783048	18018047
SERHL2_chr22_42548956_42579382	1/1	c0001	945	208	37	62	64	13	30	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	c0002	945	154	18	4	125	0	7	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	c0003	945	26	18	6	0	1	1	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	c0004	945	6	0	0	6	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	c0005	945	4	0	2	1	0	1	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	c0006	945	4	2	0	1	0	1	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	c0007	945	4	4	0	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	c0008	945	4	4	0	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	c0009	945	3	0	0	3	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	c0010	945	2	0	1	0	0	1	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	c0011	945	2	2	0	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	c0012	945	2	0	1	0	0	1	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	c0013	945	2	0	2	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	c0014	945	1	1	0	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	c0015	945	1	0	0	1	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	c0016	945	1	0	1	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	c0017	945	1	0	0	1	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	c0018	945	1	0	1	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	c0019	945	1	1	0	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	c0020	945	1	0	1	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	c0021	945	1	1	0	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	c0022	851	1	0	1	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	c0023	945	1	1	0	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382