JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SHC2_chr19_411589_466033	0/0	c0015	1749	1	0	1	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	c0016	1749	1	0	1	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	c0017	1749	1	1	0	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	c0018	1749	1	1	0	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	c0019	1749	1	1	0	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	c0020	1749	1	0	1	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	c0021	1749	1	1	0	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	c0022	1749	1	1	0	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	c0023	1749	1	1	0	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	c0024	1749	1	1	0	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	c0025	1749	1	0	1	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC3_chr9_89000771_89183818	0/0	c0001	1785	108	52	26	7	6	17	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	1/1	c0002	1785	49	12	21	1	6	7	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	c0003	1785	17	6	9	0	1	1	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	c0004	1785	5	3	0	0	1	1	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	c0005	1785	3	3	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	c0006	1785	2	1	1	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	c0007	1785	2	2	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	c0008	1785	1	0	1	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	c0009	1785	1	1	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC4_chr15_48818741_48968919	1/1	c0001	1893	316	78	56	127	16	37	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	c0002	1893	37	2	6	22	0	7	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	c0003	1893	16	0	1	15	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	c0004	1893	4	4	0	0	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	c0005	1893	2	0	0	2	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	c0006	1893	2	0	0	2	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	c0007	1893	1	0	0	1	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	c0008	1893	1	1	0	0	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	c0009	1893	1	1	0	0	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	c0010	1893	1	0	0	1	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	c0011	1893	1	0	0	1	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	c0012	1893	1	0	1	0	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	c0013	1893	1	0	0	1	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHCBP1L_chr1_182894865_182958166	1/1	c0001	1962	195	51	51	68	8	15	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	c0002	1962	42	1	3	33	1	4	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	c0003	1962	18	12	2	1	0	3	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	c0004	1962	11	1	0	10	0	0	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	c0005	1962	9	0	8	0	1	0	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	c0006	1962	8	8	0	0	0	0	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	c0007	1962	7	7	0	0	0	0	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	c0008	1962	5	5	0	0	0	0	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	c0009	1962	2	2	0	0	0	0	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	c0010	1962	1	0	0	0	0	1	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	c0011	1962	1	0	0	1	0	0	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	c0012	1962	1	0	0	0	0	1	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	c0013	1962	1	1	0	0	0	0	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	c0014	1962	1	0	0	1	0	0	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1_chr16_46573591_46626379	0/1	c0001	2019	161	63	40	27	6	24	copy fasta	SHCBP1	chr16	46573591	46626379
SHCBP1_chr16_46573591_46626379	0/0	c0002	2019	10	1	2	7	0	0	copy fasta	SHCBP1	chr16	46573591	46626379
SHCBP1_chr16_46573591_46626379	1/0	c0003	2019	7	5	1	0	0	0	copy fasta	SHCBP1	chr16	46573591	46626379