JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SHMT2_chr12_57224711_57239935	0/1	c0004	1515	11	9	1	0	0	0	copy fasta	SHMT2	chr12	57224711	57239935
SHMT2_chr12_57224711_57239935	0/0	c0005	1515	6	0	4	0	1	1	copy fasta	SHMT2	chr12	57224711	57239935
SHMT2_chr12_57224711_57239935	0/0	c0006	1515	2	0	0	2	0	0	copy fasta	SHMT2	chr12	57224711	57239935
SHMT2_chr12_57224711_57239935	0/0	c0007	1515	1	0	1	0	0	0	copy fasta	SHMT2	chr12	57224711	57239935
SHMT2_chr12_57224711_57239935	0/0	c0008	1515	1	0	0	1	0	0	copy fasta	SHMT2	chr12	57224711	57239935
SHMT2_chr12_57224711_57239935	0/0	c0009	1515	1	0	0	1	0	0	copy fasta	SHMT2	chr12	57224711	57239935
SHMT2_chr12_57224711_57239935	0/0	c0010	1515	1	0	0	1	0	0	copy fasta	SHMT2	chr12	57224711	57239935
SHMT2_chr12_57224711_57239935	0/0	c0011	1515	1	0	0	0	0	1	copy fasta	SHMT2	chr12	57224711	57239935
SHOC1_chr9_111681171_111799937	0/0	c0001	4527	99	9	19	55	6	10	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0002	4527	36	0	4	20	0	12	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0003	4527	29	6	16	2	1	4	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0004	4527	26	0	9	9	2	6	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0005	4527	21	11	1	5	0	4	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0006	4527	16	15	1	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0007	4527	12	11	1	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0008	4527	11	10	1	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0009	4527	10	7	3	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0010	4527	6	6	0	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0011	4527	5	4	1	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0012	4527	4	4	0	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/1	c0013	4527	3	0	0	0	2	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0014	4527	2	2	0	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0015	4527	1	1	0	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0016	4527	1	0	0	0	0	1	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0017	4527	1	0	0	0	1	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0018	4527	1	0	1	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0019	4527	1	0	0	1	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	1/0	c0020	4527	1	0	0	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0021	4527	1	0	0	1	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0022	4527	1	1	0	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0023	4527	1	0	0	1	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0024	4527	1	0	0	1	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0025	4527	1	0	0	1	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0026	4527	1	0	1	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0027	4527	1	0	0	0	0	1	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0028	4527	1	1	0	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0029	4527	1	1	0	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	c0030	4527	1	1	0	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC2_chr10_110914604_111018665	1/1	c0001	1749	377	86	50	189	8	42	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	c0002	1749	6	5	1	0	0	0	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	c0003	1749	1	0	0	1	0	0	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	c0004	1749	1	1	0	0	0	0	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	c0005	1749	1	0	1	0	0	0	copy fasta	SHOC2	chr10	110914604	111018665
SHOX2_chr3_158090905_158111420	1/1	c0001	960	365	89	68	147	16	43	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	c0002	960	5	0	0	3	0	2	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	c0003	960	4	0	0	4	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	c0004	948	1	0	0	0	0	1	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	c0005	939	1	0	0	1	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	c0006	972	1	1	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	c0007	960	1	0	0	1	0	0	copy fasta	SHOX2	chr3	158090905	158111420