JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SHOX2_chr3_158090905_158111420	0/0	c0008	960	1	0	0	1	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	c0009	960	1	0	0	1	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX_chrX_625791_656584	1/1	c0001	879	210	58	40	90	8	12	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	c0002	880	5	0	0	3	0	2	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	c0003	879	2	2	0	0	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	c0004	880	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	c0005	879	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	c0006	944	1	0	0	0	0	1	copy fasta	SHOX	chrX	625791	656584
SHPK_chr17_3603240_3641250	1/1	c0001	1437	265	37	72	114	11	29	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	c0002	1437	95	34	6	37	4	14	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	c0003	1437	6	6	0	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	c0004	1437	3	0	0	3	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	c0005	1437	2	0	0	2	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	c0006	1437	1	0	0	0	1	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	c0007	1437	1	0	0	0	0	1	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	c0008	1437	1	0	0	1	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	c0009	1437	1	0	1	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	c0010	1437	1	1	0	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	c0011	1437	1	0	0	1	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	c0012	1437	1	0	1	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	c0013	1437	1	0	0	1	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	c0014	1437	1	0	0	1	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	c0015	1437	1	0	1	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	c0016	1437	1	0	1	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPRH_chr6_145879807_145969358	0/1	c0001	5052	203	36	44	91	9	22	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	1/0	c0002	5052	69	3	8	46	3	8	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	c0003	5052	22	21	1	0	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	c0004	5052	17	15	2	0	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	c0005	5052	16	0	0	16	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	c0006	5052	6	0	0	6	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	c0007	5052	4	4	0	0	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	c0008	5052	2	1	1	0	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	c0009	5052	2	0	0	2	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	c0010	5052	2	0	0	2	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	c0011	5052	2	0	0	2	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	c0012	5052	1	0	0	0	0	1	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	c0013	5052	1	1	0	0	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	c0014	5052	1	0	0	1	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	c0015	5052	1	1	0	0	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	c0016	5052	1	0	0	0	0	1	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	c0017	5052	1	0	0	0	0	1	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	c0018	5052	1	0	0	1	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	c0019	5052	1	0	0	1	0	0	copy fasta	SHPRH	chr6	145879807	145969358
SHPRH_chr6_145879807_145969358	0/0	c0020	5052	1	0	0	0	0	1	copy fasta	SHPRH	chr6	145879807	145969358
SHQ1_chr3_72744277_72853445	1/1	c0001	1734	131	24	26	59	4	16	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	c0002	1734	63	39	11	10	2	1	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	c0003	1734	10	10	0	0	0	0	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	c0004	1734	3	0	2	0	0	1	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	c0005	1734	3	3	0	0	0	0	copy fasta	SHQ1	chr3	72744277	72853445
SHQ1_chr3_72744277_72853445	0/0	c0006	1734	3	3	0	0	0	0	copy fasta	SHQ1	chr3	72744277	72853445