JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SIGLEC14_chr19_51634478_51651825	0/0	c0009	1191	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	c0010	1191	1	0	1	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	c0011	1191	1	0	0	0	0	1	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	c0012	1191	1	0	0	0	1	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	c0013	17615	1	0	1	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	c0014	1191	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	c0015	1191	1	0	0	0	1	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	c0016	1191	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC15_chr18_45820675_45849094	1/1	c0001	987	229	33	47	108	10	29	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	c0002	987	106	4	19	73	1	9	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	c0003	987	22	15	0	5	2	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	c0004	987	13	13	0	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	c0005	987	12	11	0	0	0	1	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	c0006	987	10	9	0	1	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	c0007	987	5	0	2	0	0	3	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	c0008	987	3	0	2	1	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	c0009	987	2	0	0	2	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	c0010	987	2	1	0	0	1	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	c0011	987	1	0	0	1	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	c0012	987	1	1	0	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	c0013	987	1	0	0	0	0	1	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	c0014	987	1	0	0	0	0	1	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	c0015	987	1	0	1	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	c0016	987	1	0	1	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	c0017	987	1	1	0	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	c0018	987	1	1	0	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	c0019	987	1	1	0	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	c0020	987	1	0	0	1	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC1_chr20_3681970_3717600	0/0	c0001	5130	72	7	14	36	2	13	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0002	5130	69	12	1	52	1	3	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/1	c0003	5130	57	6	14	27	6	3	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0004	5130	38	0	9	25	0	4	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0005	5130	21	0	0	20	0	1	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0006	5130	13	6	2	0	1	4	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0007	5130	10	0	8	2	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0008	5130	8	0	3	3	0	2	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0009	5130	7	7	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0010	5130	7	0	5	0	1	1	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0011	5130	7	0	2	0	2	3	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0012	5130	7	0	0	7	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0013	5130	6	6	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0014	5130	6	5	1	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0015	5130	5	0	0	0	0	5	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0016	5130	5	4	1	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0017	5130	5	1	2	0	2	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0018	5130	4	2	0	2	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0019	5130	4	4	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0020	5130	3	3	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0021	5130	3	0	3	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	1/0	c0022	5130	3	0	1	0	0	1	copy fasta	SIGLEC1	chr20	3681970	3717600