JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SIGLEC1_chr20_3681970_3717600	0/0	c0073	5130	1	1	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0074	5130	1	1	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0075	5130	1	1	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0076	5130	1	1	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0077	5130	1	1	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0078	5130	1	0	0	0	0	1	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	c0079	5130	1	0	0	1	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC5_chr19_51605960_51635401	1/0	c0001	1656	90	13	14	46	5	11	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0002	1656	76	1	6	63	1	5	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/1	c0003	1656	33	2	23	0	2	5	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0004	1656	33	3	4	23	0	3	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0005	1656	19	14	2	1	2	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0006	1656	18	14	1	0	1	2	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0007	1656	17	0	14	1	0	2	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0008	1235	14	0	0	11	1	2	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0009	1656	8	0	3	5	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0010	1656	7	1	0	6	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0011	1656	7	7	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0012	1656	7	7	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0013	1656	6	4	0	0	1	1	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0014	1235	6	4	1	1	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0015	1235	5	0	0	3	1	1	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0016	1014	4	0	0	0	0	4	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0017	1656	4	3	0	0	0	1	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0018	1656	4	4	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0019	1014	3	0	0	3	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0020	1656	3	0	2	0	1	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0021	1656	3	0	0	3	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0022	1656	3	0	0	3	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0023	1656	3	2	1	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0024	1235	3	0	0	3	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0025	1656	2	0	0	2	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0026	1656	2	1	1	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0027	1656	2	1	1	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0028	1235	2	0	0	0	1	1	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0029	1014	1	0	0	0	0	1	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0030	1014	1	0	0	1	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0031	1014	1	1	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0032	1656	1	1	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0033	1656	1	0	0	0	0	1	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0034	1656	1	0	0	0	0	1	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0035	1656	1	0	1	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0036	1656	1	0	0	1	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0037	1656	1	0	0	1	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0038	1656	1	0	0	1	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0039	1656	1	0	0	1	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0040	1656	1	1	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0041	1656	1	0	0	0	0	1	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0042	1656	1	1	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	c0043	1656	1	1	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401