JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SIRPD_chr20_1529251_1562705	0/0	c0007	594	1	0	0	1	0	0	copy fasta	SIRPD	chr20	1529251	1562705
SIRPD_chr20_1529251_1562705	0/0	c0008	594	1	1	0	0	0	0	copy fasta	SIRPD	chr20	1529251	1562705
SIRPD_chr20_1529251_1562705	0/0	c0009	594	1	0	0	1	0	0	copy fasta	SIRPD	chr20	1529251	1562705
SIRPG_chr20_1624152_1662779	0/0	c0001	1164	121	12	22	65	2	20	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0002	1164	86	6	21	45	3	11	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	1/1	c0003	1164	51	2	11	26	3	7	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0004	1164	49	34	7	0	5	3	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0005	1164	10	3	3	1	0	3	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0006	1164	10	9	1	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0007	1164	6	5	0	1	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0008	1164	5	0	0	5	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0009	1164	5	0	2	0	2	1	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0010	1164	5	0	0	5	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0011	1164	5	5	0	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0012	1164	5	0	0	5	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0013	1164	4	3	1	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0014	1164	3	0	1	2	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0015	1164	2	1	1	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0016	1164	2	2	0	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0017	1164	2	0	0	2	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0018	1164	2	0	0	2	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0019	1164	2	2	0	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0020	1164	2	2	0	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0021	1164	2	0	1	0	0	1	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0022	1164	1	0	1	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0023	1164	1	0	1	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0024	1164	1	0	0	0	0	1	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0025	1164	1	0	0	0	0	1	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0026	1164	1	0	0	0	1	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0027	1164	1	0	1	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0028	1164	1	1	0	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0029	1164	1	1	0	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0030	1164	1	0	1	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0031	1164	1	1	0	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0032	1164	1	1	0	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0033	1164	1	0	1	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0034	1164	1	1	0	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0035	1164	1	0	0	1	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0036	1164	1	1	0	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0037	1164	1	0	0	1	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	c0038	1164	1	0	0	1	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRT1_chr10_67879656_67923390	1/0	c0001	2244	317	80	61	123	15	37	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/1	c0002	2244	79	3	8	61	1	5	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	c0003	2244	3	3	0	0	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	c0004	2244	2	2	0	0	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	c0005	2244	2	0	1	1	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	c0006	2244	1	0	0	0	0	1	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	c0007	2244	1	0	0	1	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	c0008	2244	1	1	0	0	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	c0009	2244	1	0	0	0	0	1	copy fasta	SIRT1	chr10	67879656	67923390