JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SIRT1_chr10_67879656_67923390	0/0	c0010	2244	1	0	0	1	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	c0011	2220	1	1	0	0	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	c0012	2244	1	0	0	1	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT2_chr19_38873560_38904618	1/1	c0001	1170	414	87	74	193	12	46	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	c0002	1170	2	2	0	0	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	c0003	1170	1	0	0	1	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	c0004	1170	1	1	0	0	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	c0005	1170	1	0	0	1	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	c0006	1170	1	1	0	0	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	c0007	1170	1	1	0	0	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	c0008	1170	1	0	0	1	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	c0009	1170	1	1	0	0	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	c0010	1170	1	0	0	1	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	c0011	1170	1	1	0	0	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	c0012	1170	1	0	0	1	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT3_chr11_210030_241342	1/1	c0001	1200	285	71	67	120	7	18	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	c0002	1200	62	8	7	28	4	15	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	c0003	1200	39	0	9	23	1	6	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	c0004	1200	7	6	1	0	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	c0005	1200	5	5	0	0	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	c0006	1200	4	4	0	0	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	c0007	1200	3	0	0	2	0	1	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	c0008	1200	2	2	0	0	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	c0009	1200	1	0	0	0	0	1	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	c0010	1200	1	0	0	1	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	c0011	1200	1	1	0	0	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	c0012	1200	1	1	0	0	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	c0013	1200	1	0	0	0	0	1	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	c0014	1200	1	1	0	0	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	c0015	1200	1	1	0	0	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT4_chr12_120297321_120318249	1/1	c0001	945	334	83	59	135	16	39	copy fasta	SIRT4	chr12	120297321	120318249
SIRT4_chr12_120297321_120318249	0/0	c0002	945	29	1	9	14	0	5	copy fasta	SIRT4	chr12	120297321	120318249
SIRT4_chr12_120297321_120318249	0/0	c0003	945	5	5	0	0	0	0	copy fasta	SIRT4	chr12	120297321	120318249
SIRT4_chr12_120297321_120318249	0/0	c0004	945	4	4	0	0	0	0	copy fasta	SIRT4	chr12	120297321	120318249
SIRT4_chr12_120297321_120318249	0/0	c0005	945	3	0	0	3	0	0	copy fasta	SIRT4	chr12	120297321	120318249
SIRT4_chr12_120297321_120318249	0/0	c0006	497	1	0	0	1	0	0	copy fasta	SIRT4	chr12	120297321	120318249
SIRT4_chr12_120297321_120318249	0/0	c0007	945	1	0	0	1	0	0	copy fasta	SIRT4	chr12	120297321	120318249
SIRT4_chr12_120297321_120318249	0/0	c0008	945	1	0	0	1	0	0	copy fasta	SIRT4	chr12	120297321	120318249
SIRT4_chr12_120297321_120318249	0/0	c0009	945	1	1	0	0	0	0	copy fasta	SIRT4	chr12	120297321	120318249
SIRT4_chr12_120297321_120318249	0/0	c0010	945	1	0	0	1	0	0	copy fasta	SIRT4	chr12	120297321	120318249
SIRT5_chr6_13569601_13620158	1/0	c0001	933	299	74	47	140	12	25	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/1	c0002	933	64	2	13	38	3	7	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	c0003	933	13	2	8	0	1	2	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	c0004	933	7	7	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	c0005	933	6	1	4	0	0	1	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	c0006	933	1	1	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	c0007	933	1	0	1	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	c0008	933	1	0	0	0	0	1	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	c0009	933	1	0	1	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158
SIRT5_chr6_13569601_13620158	0/0	c0010	933	1	1	0	0	0	0	copy fasta	SIRT5	chr6	13569601	13620158