JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SIX3_chr2_44936702_44951071	0/0	c0004	999	6	4	2	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	c0005	999	4	3	0	0	0	1	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	c0006	999	1	0	1	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	c0007	999	1	0	0	1	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	c0008	999	1	0	0	1	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	c0009	999	1	0	1	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	c0010	999	1	1	0	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX3_chr2_44936702_44951071	0/0	c0011	999	1	0	1	0	0	0	copy fasta	SIX3	chr2	44936702	44951071
SIX4_chr14_60704539_60729351	0/0	c0001	2346	200	42	39	81	9	29	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	1/1	c0002	2346	134	18	14	81	3	16	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	c0003	2346	7	6	1	0	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	c0004	2346	6	0	0	5	0	1	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	c0005	2346	2	1	1	0	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	c0006	2346	2	2	0	0	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	c0007	2346	1	0	1	0	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	c0008	2346	1	1	0	0	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	c0009	2346	1	0	0	1	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	c0010	2346	1	1	0	0	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX4_chr14_60704539_60729351	0/0	c0011	2346	1	1	0	0	0	0	copy fasta	SIX4	chr14	60704539	60729351
SIX5_chr19_45759785_45774252	0/0	c0001	2220	221	24	52	107	9	29	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/1	c0002	2220	99	17	19	46	5	11	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	1/0	c0003	2220	35	0	5	23	3	3	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	c0004	2220	30	28	0	1	0	1	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	c0005	2220	9	6	3	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	c0006	2220	2	0	2	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	c0007	2220	2	2	0	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	c0008	2220	2	2	0	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	c0009	2220	2	2	0	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	c0010	2220	2	0	2	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	c0011	2220	1	1	0	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	c0012	2220	1	0	1	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	c0013	2182	1	0	0	1	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	c0014	2220	1	1	0	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	c0015	2220	1	1	0	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	c0016	2220	1	0	0	1	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	c0017	2220	1	0	0	0	1	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	c0018	2220	1	1	0	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	c0019	2220	1	0	0	1	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX5_chr19_45759785_45774252	0/0	c0020	2220	1	1	0	0	0	0	copy fasta	SIX5	chr19	45759785	45774252
SIX6_chr14_60504146_60517850	1/0	c0001	741	278	59	26	155	7	30	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/1	c0002	741	105	5	28	47	8	16	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	c0003	741	3	1	1	0	1	0	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	c0004	741	3	0	0	3	0	0	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	c0005	741	1	0	1	0	0	0	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	c0006	741	1	1	0	0	0	0	copy fasta	SIX6	chr14	60504146	60517850
SIX6_chr14_60504146_60517850	0/0	c0007	741	1	0	0	1	0	0	copy fasta	SIX6	chr14	60504146	60517850
SI_chr3_164973898_165083496	0/0	c0001	5484	114	20	22	56	6	10	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0002	5484	37	2	5	21	3	6	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	1/0	c0003	5484	26	4	14	6	0	1	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0004	5484	19	18	1	0	0	0	copy fasta	SI	chr3	164973898	165083496