JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SI_chr3_164973898_165083496	0/0	c0005	5484	12	7	2	0	0	3	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/1	c0006	5484	12	9	1	0	1	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0007	5484	5	5	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0008	5484	4	1	2	1	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0009	5484	3	3	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0010	5484	3	1	2	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0011	5484	2	0	2	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0012	5484	2	0	0	2	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0013	5484	2	0	2	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0014	5484	2	1	1	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0015	5484	1	0	0	0	0	1	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0016	5484	1	0	1	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0017	5484	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0018	5484	1	0	0	1	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0019	5484	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0020	5484	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0021	5484	1	0	0	0	0	1	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0022	5484	1	0	0	1	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0023	5484	1	0	0	0	0	1	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0024	5484	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0025	5484	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0026	5484	1	0	0	0	0	1	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0027	5484	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0028	5484	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0029	5484	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0030	5484	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0031	5484	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0032	5484	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0033	5484	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0034	5484	1	0	1	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0035	5484	1	0	1	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0036	5484	1	0	1	0	0	0	copy fasta	SI	chr3	164973898	165083496
SI_chr3_164973898_165083496	0/0	c0037	5484	1	1	0	0	0	0	copy fasta	SI	chr3	164973898	165083496
SKA1_chr18_50370046_50399168	0/0	c0001	768	273	68	38	125	12	30	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/1	c0002	768	61	4	17	21	6	12	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	c0003	768	34	4	0	30	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	c0004	768	16	15	1	0	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	c0005	768	2	0	0	0	0	2	copy fasta	SKA1	chr18	50370046	50399168
SKA1_chr18_50370046_50399168	0/0	c0006	768	1	1	0	0	0	0	copy fasta	SKA1	chr18	50370046	50399168
SKA2_chr17_59104857_59160186	1/1	c0001	366	293	82	62	101	12	34	copy fasta	SKA2	chr17	59104857	59160186
SKA2_chr17_59104857_59160186	0/0	c0002	366	1	0	0	1	0	0	copy fasta	SKA2	chr17	59104857	59160186
SKA3_chr13_21148595_21181552	0/0	c0001	1781	279	54	57	131	8	29	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	1/0	c0002	1781	35	27	4	0	1	2	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	c0003	1780	32	0	1	20	5	6	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/1	c0004	1780	7	0	5	0	0	1	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	c0005	1781	5	5	0	0	0	0	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	c0006	1782	4	3	1	0	0	0	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	c0007	1781	2	0	1	0	0	1	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	c0008	1780	2	0	0	2	0	0	copy fasta	SKA3	chr13	21148595	21181552
SKA3_chr13_21148595_21181552	0/0	c0009	1780	2	0	0	0	0	2	copy fasta	SKA3	chr13	21148595	21181552