JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC12A2_chr5_128078766_128194677	1/1	c0001	3639	179	20	33	93	7	24	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	c0002	3639	144	50	25	57	5	7	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	c0003	3639	12	10	2	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	c0004	3642	6	3	0	3	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	c0005	3621	2	0	0	0	0	2	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	c0006	3639	1	0	0	0	0	1	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	c0007	3639	1	0	0	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	c0008	3639	1	1	0	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	c0009	3639	1	0	1	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	c0010	3639	1	0	0	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	c0011	3639	1	0	0	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	c0012	3642	1	0	0	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	c0013	3627	1	1	0	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	c0014	3615	1	0	0	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	c0015	3639	1	1	0	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	c0016	3639	1	0	1	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A3_chr16_56860207_56920850	0/1	c0001	3066	174	35	29	82	8	19	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0002	3066	49	1	10	32	2	4	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0003	3066	28	14	5	3	3	3	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0004	3066	21	0	1	16	1	3	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0005	3066	14	1	0	10	0	3	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0006	3066	14	9	1	0	2	2	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0007	3066	12	0	5	6	0	1	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0008	3066	8	8	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0009	3066	7	0	3	1	0	3	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0010	3066	7	0	4	1	1	1	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0011	3066	6	0	0	6	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0012	3066	5	0	0	5	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0013	3066	5	5	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0014	3066	5	0	1	4	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0015	3066	4	0	4	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0016	3066	4	0	0	4	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0017	3066	3	0	0	3	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0018	3066	3	0	3	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0019	3066	3	0	3	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	1/0	c0020	3066	2	0	0	0	0	1	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0021	3066	2	1	1	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0022	3066	2	2	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0023	3066	2	0	0	0	0	2	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0024	3066	2	2	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0025	3066	2	2	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0026	3066	2	1	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0027	3066	2	0	0	2	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0028	3066	2	0	1	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0029	3066	2	2	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0030	3066	1	1	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0031	3066	1	1	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0032	3066	1	1	0	0	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0033	3066	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850
SLC12A3_chr16_56860207_56920850	0/0	c0034	3066	1	0	0	1	0	0	copy fasta	SLC12A3	chr16	56860207	56920850