JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC16A6_chr17_68262026_68296127	0/0	c0011	1572	2	2	0	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	c0012	1572	1	0	1	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	c0013	1572	1	0	0	0	1	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	c0014	1572	1	1	0	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	c0015	1572	1	0	0	0	0	1	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	c0016	1572	1	0	1	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	c0017	1572	1	1	0	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	c0018	1572	1	1	0	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	c0019	1572	1	0	0	0	0	1	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A7_chr12_59591029_59794841	1/1	c0001	1437	164	55	27	67	4	9	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	c0002	1437	68	15	8	34	2	9	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	c0003	1437	19	3	1	5	0	10	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	c0004	1437	2	0	2	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	c0005	1437	2	2	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	c0006	1437	1	1	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	c0007	1437	1	0	0	1	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	c0008	1437	1	1	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	c0009	1437	1	0	0	1	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	c0010	1437	1	1	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A8_chr22_38073137_38089184	0/1	c0001	1515	168	35	26	93	4	9	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0002	1515	136	47	17	56	1	15	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	1/0	c0003	1515	83	1	24	31	8	18	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0004	1515	21	2	2	14	1	2	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0005	1515	7	0	4	0	3	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0006	1515	6	5	1	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0007	1515	4	0	0	0	0	4	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0008	1515	4	0	0	4	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0009	1515	2	0	0	2	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0010	1515	2	1	0	0	1	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0011	1515	2	0	2	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0012	1515	2	0	0	2	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0013	1515	2	0	0	2	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0014	1515	1	1	0	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0015	1515	1	1	0	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0016	1515	1	1	0	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0017	1515	1	1	0	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0018	1515	1	0	1	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0019	1503	1	0	1	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0020	1504	1	1	0	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0021	1515	1	0	0	1	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0022	1515	1	0	0	1	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0023	1515	1	1	0	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0024	1515	1	1	0	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0025	1515	1	1	0	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	c0026	1504	1	1	0	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A9_chr10_59645764_59714850	1/0	c0001	1530	231	78	51	72	11	18	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	c0002	1530	100	4	17	65	1	13	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	c0003	1530	9	8	1	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/1	c0004	1530	5	0	0	0	1	3	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	c0005	1530	1	0	1	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850