JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC30A4_chr15_45474606_45527755	0/0	c0004	1290	19	0	0	17	0	2	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	c0005	1290	1	0	0	1	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	c0006	1290	1	0	0	1	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A5_chr5_69089014_69136069	1/1	c0001	2298	211	48	37	91	6	27	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	c0002	2298	171	28	31	91	8	13	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	c0003	2298	10	8	2	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	c0004	2298	4	4	0	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	c0005	2298	3	0	0	3	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	c0006	2298	2	2	0	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	c0007	2298	1	1	0	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	c0008	2298	1	1	0	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	c0009	2298	1	0	0	1	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	c0010	2298	1	1	0	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	c0011	2298	1	1	0	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	c0012	2298	1	1	0	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	c0013	2298	1	1	0	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A6_chr2_32160864_32229379	1/1	c0001	1386	362	87	69	161	14	29	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	c0002	1386	3	0	0	3	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	c0003	1386	3	0	0	3	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	c0004	1386	1	0	1	0	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	c0005	1386	1	0	0	1	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	c0006	1386	1	0	0	0	0	1	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	c0007	1386	1	1	0	0	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	c0008	1386	1	1	0	0	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	c0009	1386	1	0	0	1	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	c0010	1386	1	1	0	0	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	c0011	1386	1	0	0	1	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A7_chr1_100891090_100986757	1/1	c0001	1131	219	70	33	67	12	35	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	c0002	1131	1	0	1	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	c0003	1131	1	0	0	1	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	c0004	1131	1	0	0	0	0	1	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A8_chr8_117129995_117181714	1/1	c0001	1110	219	70	35	76	10	26	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	c0002	1110	82	4	20	50	6	2	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	c0003	1110	20	9	1	10	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	c0004	1110	4	2	2	0	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	c0005	1110	1	1	0	0	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	c0006	1110	1	1	0	0	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	c0007	1110	1	1	0	0	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A9_chr4_41985530_42095461	0/0	c0001	1707	73	49	9	6	1	8	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/1	c0002	1707	46	8	10	13	3	11	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	c0003	1707	18	7	8	0	1	2	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	c0004	1707	13	7	1	3	0	2	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	1/0	c0005	1707	8	4	1	2	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	c0006	1707	2	1	1	0	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	c0007	1707	1	1	0	0	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	c0008	1707	1	1	0	0	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	c0009	1707	1	0	0	0	0	1	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	c0010	1707	1	0	0	0	1	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC31A1_chr9_113216544_113269492	1/1	c0001	573	403	79	66	200	14	42	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	c0002	573	7	7	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492