JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC31A1_chr9_113216544_113269492	0/0	c0003	573	3	2	0	1	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	c0004	573	2	0	0	2	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	c0005	573	1	0	0	1	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	c0006	573	1	0	0	1	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	c0007	573	1	0	0	1	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A2_chr9_113146007_113169140	1/1	c0001	432	301	72	47	143	12	25	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	c0002	432	154	19	30	86	4	15	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	c0003	432	1	1	0	0	0	0	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	c0004	432	1	0	1	0	0	0	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	c0005	432	1	0	0	1	0	0	copy fasta	SLC31A2	chr9	113146007	113169140
SLC32A1_chr20_38719486_38734372	1/1	c0001	1578	416	75	76	197	18	48	copy fasta	SLC32A1	chr20	38719486	38734372
SLC32A1_chr20_38719486_38734372	0/0	c0002	1578	7	7	0	0	0	0	copy fasta	SLC32A1	chr20	38719486	38734372
SLC32A1_chr20_38719486_38734372	0/0	c0003	1578	2	0	0	0	0	2	copy fasta	SLC32A1	chr20	38719486	38734372
SLC32A1_chr20_38719486_38734372	0/0	c0004	1578	2	2	0	0	0	0	copy fasta	SLC32A1	chr20	38719486	38734372
SLC32A1_chr20_38719486_38734372	0/0	c0005	1578	1	0	0	1	0	0	copy fasta	SLC32A1	chr20	38719486	38734372
SLC32A1_chr20_38719486_38734372	0/0	c0006	1578	1	0	0	1	0	0	copy fasta	SLC32A1	chr20	38719486	38734372
SLC32A1_chr20_38719486_38734372	0/0	c0007	1578	1	0	0	1	0	0	copy fasta	SLC32A1	chr20	38719486	38734372
SLC33A1_chr3_155816024_155859427	1/1	c0001	1650	325	77	77	119	12	38	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	c0002	1650	56	16	6	27	2	5	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	c0003	1650	3	3	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	c0004	1650	1	0	0	0	0	1	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	c0005	1650	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	c0006	1650	1	0	0	1	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	c0007	1650	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	c0008	1650	1	0	0	1	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	c0009	1650	1	0	0	1	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	c0010	1650	1	0	1	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	c0011	1650	1	0	0	1	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC34A1_chr5_177379434_177403848	1/1	c0001	1920	298	76	48	140	8	24	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	c0002	1920	109	3	24	51	8	23	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	c0003	1920	9	9	0	0	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	c0004	1920	6	6	0	0	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	c0005	1920	1	0	0	1	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	c0006	1920	1	0	1	0	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	c0007	1920	1	0	0	1	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	c0008	1920	1	0	1	0	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	c0009	1920	1	1	0	0	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	c0010	1920	1	0	0	0	0	1	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	c0011	1920	1	1	0	0	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	c0012	1920	1	1	0	0	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	c0013	1920	1	0	0	1	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A1_chr5_177379434_177403848	0/0	c0014	1920	1	1	0	0	0	0	copy fasta	SLC34A1	chr5	177379434	177403848
SLC34A2_chr4_25650851_25683748	0/1	c0001	2073	367	81	57	181	12	35	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	1/0	c0002	2073	19	0	8	0	1	9	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	c0003	2073	8	0	3	5	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	c0004	2073	7	0	3	0	3	1	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	c0005	2073	6	6	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	c0006	2073	5	5	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	c0007	2073	3	3	0	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748
SLC34A2_chr4_25650851_25683748	0/0	c0008	2073	3	0	3	0	0	0	copy fasta	SLC34A2	chr4	25650851	25683748