JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC6A9_chr1_43991483_44036462	0/0	c0013	1902	1	0	0	0	0	1	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	c0014	1902	1	0	0	1	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC7A10_chr19_33203664_33230850	1/1	c0001	1572	339	70	61	142	17	47	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A10_chr19_33203664_33230850	0/0	c0002	1572	37	0	8	28	1	0	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A10_chr19_33203664_33230850	0/0	c0003	1572	23	22	1	0	0	0	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A10_chr19_33203664_33230850	0/0	c0004	1572	4	4	0	0	0	0	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A10_chr19_33203664_33230850	0/0	c0005	1572	1	0	1	0	0	0	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A10_chr19_33203664_33230850	0/0	c0006	1572	1	1	0	0	0	0	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A10_chr19_33203664_33230850	0/0	c0007	1572	1	0	0	0	0	1	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A10_chr19_33203664_33230850	0/0	c0008	1572	1	1	0	0	0	0	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A10_chr19_33203664_33230850	0/0	c0009	1552	1	0	1	0	0	0	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A10_chr19_33203664_33230850	0/0	c0010	1572	1	1	0	0	0	0	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A10_chr19_33203664_33230850	0/0	c0011	1572	1	1	0	0	0	0	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A11_chr4_138159097_138247349	0/0	c0001	1506	220	33	33	133	6	15	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/1	c0002	1506	88	20	24	21	7	15	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	1/0	c0003	1506	32	29	2	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	c0004	1506	5	0	0	4	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	c0005	1506	3	0	1	0	2	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	c0006	1506	3	3	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	c0007	1506	3	3	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	c0008	1506	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	c0009	1506	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	c0010	1506	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	c0011	1506	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	c0012	1506	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	c0013	1506	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	c0014	1506	1	1	0	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	c0015	1506	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	c0016	1506	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	c0017	1506	1	0	0	0	1	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A13_chr8_86209063_86235381	1/0	c0001	1413	174	22	36	94	5	16	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	c0002	1412	93	3	11	58	0	21	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/1	c0003	1413	68	14	13	32	1	7	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	c0004	1413	34	24	3	6	0	1	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	c0005	1413	21	10	6	2	1	2	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	c0006	1413	9	9	0	0	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	c0007	1413	6	6	0	0	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	c0008	1413	3	1	1	0	1	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	c0009	1413	3	2	1	0	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	c0010	1413	2	1	0	0	0	1	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	c0011	1413	2	1	1	0	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	c0012	1413	1	1	0	0	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	c0013	1413	1	1	0	0	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	c0014	1413	1	0	0	1	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	c0015	1412	1	0	1	0	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	c0016	1413	1	1	0	0	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	c0017	1413	1	1	0	0	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	c0018	1413	1	1	0	0	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	c0019	1413	1	0	0	1	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	c0020	1413	1	0	1	0	0	0	copy fasta	SLC7A13	chr8	86209063	86235381