JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLFN11_chr17_35345305_35378621	0/0	c0028	2706	1	0	0	1	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0029	2706	1	0	0	1	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0030	2706	1	0	0	1	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0031	2706	1	0	1	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0032	2706	1	1	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0033	2706	1	1	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0034	2706	1	0	0	1	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0035	2706	1	0	0	1	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0036	2706	1	0	0	0	1	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0037	2706	1	1	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0038	2706	1	1	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0039	2706	1	0	1	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0040	2706	1	0	0	1	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0041	2706	1	0	0	1	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0042	2706	1	0	1	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0043	2706	1	0	0	1	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0044	2706	1	0	0	1	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0045	2706	1	1	0	0	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN11_chr17_35345305_35378621	0/0	c0046	2706	1	0	0	1	0	0	copy fasta	SLFN11	chr17	35345305	35378621
SLFN12L_chr17_35459254_35542678	0/0	c0001	1839	78	14	10	48	2	4	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/1	c0002	1839	78	35	22	8	7	5	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	1/0	c0003	1839	66	10	12	33	3	7	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	c0004	1839	41	0	3	36	0	2	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	c0005	1839	35	4	10	5	1	15	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	c0006	1838	33	8	1	24	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	c0007	1839	8	7	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	c0008	1839	5	5	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	c0009	1839	3	3	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	c0010	1839	2	0	1	0	1	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	c0011	1839	1	0	0	1	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	c0012	1839	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	c0013	1839	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	c0014	1839	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	c0015	1839	1	0	0	1	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	c0016	1839	1	0	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	c0017	1839	1	0	0	0	0	1	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	c0018	1839	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	c0019	1838	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	c0020	1839	1	1	0	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12L_chr17_35459254_35542678	0/0	c0021	1839	1	0	1	0	0	0	copy fasta	SLFN12L	chr17	35459254	35542678
SLFN12_chr17_35405922_35437500	1/0	c0001	1737	205	34	25	127	8	10	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/1	c0002	1737	135	21	38	53	7	15	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	c0003	1737	61	27	6	6	1	21	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	c0004	1737	12	3	1	8	0	0	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	c0005	1737	5	5	0	0	0	0	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	c0006	1737	4	0	0	4	0	0	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	c0007	1737	1	1	0	0	0	0	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	c0008	1737	1	0	0	0	0	1	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	c0009	1737	1	1	0	0	0	0	copy fasta	SLFN12	chr17	35405922	35437500
SLFN12_chr17_35405922_35437500	0/0	c0010	1737	1	0	0	0	0	1	copy fasta	SLFN12	chr17	35405922	35437500