JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLFN13_chr17_35430096_35453766	1/1	c0001	2694	83	4	31	33	4	9	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0002	2694	43	1	2	37	2	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0003	2694	37	11	4	22	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0004	2694	33	20	9	0	3	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0005	2694	29	0	3	26	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0006	2694	25	5	0	16	1	3	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0007	2694	21	6	1	8	2	4	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0008	2694	21	5	1	15	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0009	2694	16	0	3	0	0	13	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0010	2694	14	0	0	13	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0011	2694	11	1	10	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0012	2694	11	1	0	10	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0013	2694	10	0	7	0	1	2	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0014	2694	7	4	2	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0015	2694	6	0	0	3	0	3	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0016	2694	5	5	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0017	2694	5	5	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0018	2694	4	0	0	4	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0019	2694	3	3	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0020	2694	3	0	1	2	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0021	2694	3	0	0	3	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0022	2694	3	3	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0023	2694	2	2	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0024	2694	2	0	1	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0025	2694	2	2	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0026	2694	2	2	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0027	2694	2	0	0	0	0	2	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0028	2694	2	2	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0029	2694	2	0	0	0	0	2	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0030	2694	2	2	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0031	2694	2	1	0	0	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0032	2694	2	0	0	0	2	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0033	2694	2	0	0	2	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0034	2694	2	0	0	1	1	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0035	2694	2	0	0	2	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0036	2694	2	0	0	2	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0037	2694	2	2	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0038	2694	2	2	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0039	2694	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0040	2694	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0041	2694	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0042	2694	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0043	2694	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0044	2694	1	1	0	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0045	2694	1	0	1	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0046	2694	1	0	0	0	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0047	2694	1	0	1	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0048	2694	1	0	1	0	0	0	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0049	2694	1	0	0	0	0	1	copy fasta	SLFN13	chr17	35430096	35453766
SLFN13_chr17_35430096_35453766	0/0	c0050	2694	1	0	0	1	0	0	copy fasta	SLFN13	chr17	35430096	35453766