JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLFN5_chr17_35238072_35278655	0/0	c0003	2676	56	3	23	14	6	10	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	c0004	2676	24	0	1	23	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	c0005	2676	10	0	0	10	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	c0006	2676	5	5	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	c0007	2676	5	5	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	c0008	2676	3	3	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	c0009	2676	3	1	1	0	0	1	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	c0010	2676	3	0	0	0	0	3	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	c0011	2676	2	2	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	c0012	2676	2	2	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	c0013	2676	1	0	0	1	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	c0014	2676	1	1	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	c0015	2676	1	0	0	0	1	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	c0016	2676	1	1	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	c0017	2676	1	1	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	c0018	2666	1	1	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	c0019	2676	1	0	0	0	1	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	c0020	2676	1	0	0	0	0	1	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	c0021	2676	1	1	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	c0022	2676	1	0	0	1	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	c0023	2676	1	1	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFNL1_chr1_41010597_41026725	1/0	c0001	1224	277	64	41	130	12	29	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0002	1225	40	6	2	27	0	5	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0003	1224	32	0	6	26	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0004	1224	23	0	11	8	2	2	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0005	1224	9	1	2	1	2	3	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0006	1224	8	8	0	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0007	1225	8	0	1	5	0	2	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0008	1225	5	0	2	3	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0009	1224	5	5	0	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/1	c0010	1224	4	1	1	0	0	1	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0011	1225	2	0	2	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0012	1224	2	0	0	0	1	1	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0013	1224	2	0	2	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0014	1224	1	0	1	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0015	1225	1	0	1	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0016	1224	1	0	1	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0017	1224	1	0	0	1	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0018	1224	1	1	0	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0019	1225	1	1	0	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0020	1225	1	1	0	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0021	1225	1	0	0	1	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0022	1225	1	0	0	0	0	1	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0023	1224	1	0	0	1	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0024	1224	1	0	0	1	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0025	1224	1	0	1	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	c0026	1224	1	0	0	0	1	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLIRP_chr14_77703103_77722598	0/1	c0001	330	351	80	64	157	18	31	copy fasta	SLIRP	chr14	77703103	77722598
SLIRP_chr14_77703103_77722598	1/0	c0002	330	52	15	2	27	0	7	copy fasta	SLIRP	chr14	77703103	77722598
SLIRP_chr14_77703103_77722598	0/0	c0003	330	1	1	0	0	0	0	copy fasta	SLIRP	chr14	77703103	77722598