JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLTM_chr15_58874050_58938679	0/0	c0004	3105	2	2	0	0	0	0	copy fasta	SLTM	chr15	58874050	58938679
SLTM_chr15_58874050_58938679	0/0	c0005	3105	1	0	0	1	0	0	copy fasta	SLTM	chr15	58874050	58938679
SLTM_chr15_58874050_58938679	0/0	c0006	3105	1	0	1	0	0	0	copy fasta	SLTM	chr15	58874050	58938679
SLTM_chr15_58874050_58938679	0/0	c0007	3105	1	0	0	1	0	0	copy fasta	SLTM	chr15	58874050	58938679
SLTM_chr15_58874050_58938679	0/0	c0008	3105	1	0	0	0	0	1	copy fasta	SLTM	chr15	58874050	58938679
SLTM_chr15_58874050_58938679	0/0	c0009	3105	1	0	1	0	0	0	copy fasta	SLTM	chr15	58874050	58938679
SLU7_chr5_160396641_160424081	0/1	c0001	1761	231	37	48	108	7	30	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	1/0	c0002	1761	191	33	23	121	4	9	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	c0003	1761	23	20	3	0	0	0	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	c0004	1761	8	2	4	0	0	2	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	c0005	1761	5	0	4	0	1	0	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	c0006	1761	1	0	0	0	0	1	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	c0007	1761	1	0	0	1	0	0	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	c0008	1761	1	0	1	0	0	0	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	c0009	1761	1	0	1	0	0	0	copy fasta	SLU7	chr5	160396641	160424081
SLURP1_chr8_142735949_142747406	1/1	c0001	312	393	86	72	177	18	38	copy fasta	SLURP1	chr8	142735949	142747406
SLURP1_chr8_142735949_142747406	0/0	c0002	312	6	6	0	0	0	0	copy fasta	SLURP1	chr8	142735949	142747406
SLURP1_chr8_142735949_142747406	0/0	c0003	312	2	2	0	0	0	0	copy fasta	SLURP1	chr8	142735949	142747406
SLURP1_chr8_142735949_142747406	0/0	c0004	327	1	0	0	1	0	0	copy fasta	SLURP1	chr8	142735949	142747406
SLURP2_chr8_142759338_142774828	1/1	c0001	294	440	88	83	205	18	44	copy fasta	SLURP2	chr8	142759338	142774828
SLURP2_chr8_142759338_142774828	0/0	c0002	294	5	4	1	0	0	0	copy fasta	SLURP2	chr8	142759338	142774828
SLURP2_chr8_142759338_142774828	0/0	c0003	294	1	0	0	1	0	0	copy fasta	SLURP2	chr8	142759338	142774828
SLX1A_chr16_30188875_30202561	0/0	c0001	828	186	47	25	92	8	14	copy fasta	SLX1A	chr16	30188875	30202561
SLX1A_chr16_30188875_30202561	0/0	c0002	828	3	3	0	0	0	0	copy fasta	SLX1A	chr16	30188875	30202561
SLX1A_chr16_30188875_30202561	0/0	c0003	828	2	2	0	0	0	0	copy fasta	SLX1A	chr16	30188875	30202561
SLX1A_chr16_30188875_30202561	0/0	c0004	828	1	0	0	0	0	1	copy fasta	SLX1A	chr16	30188875	30202561
SLX1A_chr16_30188875_30202561	0/0	c0005	828	1	0	1	0	0	0	copy fasta	SLX1A	chr16	30188875	30202561
SLX1A_chr16_30188875_30202561	0/0	c0006	828	1	0	0	0	0	1	copy fasta	SLX1A	chr16	30188875	30202561
SLX1B_chr16_29449533_29463219	0/0	c0001	828	170	26	18	106	6	14	copy fasta	SLX1B	chr16	29449533	29463219
SLX1B_chr16_29449533_29463219	0/0	c0002	828	2	2	0	0	0	0	copy fasta	SLX1B	chr16	29449533	29463219
SLX1B_chr16_29449533_29463219	0/0	c0003	828	1	0	0	1	0	0	copy fasta	SLX1B	chr16	29449533	29463219
SLX1B_chr16_29449533_29463219	0/0	c0004	828	1	0	0	1	0	0	copy fasta	SLX1B	chr16	29449533	29463219
SLX4IP_chr20_10430305_10633030	1/1	c0001	1227	240	62	55	93	8	20	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	c0002	1227	9	0	8	0	0	1	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	c0003	1227	4	0	0	4	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	c0004	1227	3	2	1	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	c0005	1227	3	0	2	0	0	1	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	c0006	1227	2	2	0	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	c0007	1227	1	0	0	0	0	1	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	c0008	1227	1	0	0	0	0	1	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	c0009	1227	1	1	0	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	c0010	1227	1	0	0	1	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	c0011	1227	1	1	0	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4_chr16_3576181_3616606	0/0	c0001	5505	78	6	16	36	2	18	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	1/1	c0002	5505	65	8	15	32	3	5	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0003	5505	58	13	11	25	1	8	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0004	5505	30	0	2	26	1	1	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0005	5505	24	21	2	0	1	0	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0006	5505	21	6	3	11	0	1	copy fasta	SLX4	chr16	3576181	3616606
SLX4_chr16_3576181_3616606	0/0	c0007	5505	18	0	5	8	2	3	copy fasta	SLX4	chr16	3576181	3616606