JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SMC1A_chrX_53369149_53427654	0/0	c0003	3702	1	1	0	0	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	c0004	3702	1	0	0	1	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	c0005	3700	1	1	0	0	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	c0006	3702	1	0	0	1	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1A_chrX_53369149_53427654	0/0	c0007	3702	1	0	1	0	0	0	copy fasta	SMC1A	chrX	53369149	53427654
SMC1B_chr22_45339063_45418599	0/0	c0001	3708	98	5	28	51	3	11	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	c0002	3708	80	50	6	23	0	1	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	c0003	3708	53	1	5	42	2	3	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	c0004	3708	44	6	8	19	0	11	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/1	c0005	3708	25	8	9	0	2	5	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	c0006	3708	12	0	7	1	1	3	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	c0007	3708	10	10	0	0	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	c0008	3708	8	0	0	8	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	c0009	3708	6	0	0	6	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	c0010	3708	4	3	1	0	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	c0011	3708	4	4	0	0	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	c0012	3708	3	2	1	0	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	c0013	3708	2	2	0	0	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	c0014	3708	2	2	0	0	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	c0015	3708	2	0	0	2	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	c0016	3708	1	1	0	0	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	c0017	3708	1	0	0	1	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	1/0	c0018	3708	1	0	0	0	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	c0019	3708	1	0	0	1	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	c0020	3708	1	0	1	0	0	0	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	c0021	3708	1	0	0	0	0	1	copy fasta	SMC1B	chr22	45339063	45418599
SMC1B_chr22_45339063_45418599	0/0	c0022	3708	1	0	0	0	0	1	copy fasta	SMC1B	chr22	45339063	45418599
SMC2_chr9_104089309_104146419	0/1	c0001	3594	122	36	31	29	5	20	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	1/0	c0002	3594	109	16	26	36	7	23	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	c0003	3594	27	22	0	5	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	c0004	3594	4	4	0	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	c0005	3594	4	1	2	0	0	1	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	c0006	3594	2	2	0	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	c0007	3594	2	2	0	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	c0008	3594	2	2	0	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	c0009	3594	2	0	2	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	c0010	3594	1	1	0	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	c0011	3594	1	0	0	1	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	c0012	3594	1	0	0	1	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC2_chr9_104089309_104146419	0/0	c0013	3594	1	0	1	0	0	0	copy fasta	SMC2	chr9	104089309	104146419
SMC3_chr10_110562695_110611048	0/1	c0001	3654	297	59	53	149	2	33	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	c0002	3654	19	15	3	0	0	1	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	1/0	c0003	3654	7	6	0	0	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	c0004	3654	2	2	0	0	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	c0005	3654	1	0	0	1	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	c0006	3654	1	0	0	1	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC3_chr10_110562695_110611048	0/0	c0007	3654	1	0	0	1	0	0	copy fasta	SMC3	chr10	110562695	110611048
SMC4_chr3_160394650_160439953	1/1	c0001	3867	289	79	62	104	11	31	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	c0002	3867	8	0	0	3	1	4	copy fasta	SMC4	chr3	160394650	160439953
SMC4_chr3_160394650_160439953	0/0	c0003	3825	6	0	0	6	0	0	copy fasta	SMC4	chr3	160394650	160439953