JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SMCO2_chr12_27441736_27507185	0/0	c0009	1032	5	4	0	1	0	0	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	c0010	657	5	0	0	3	0	2	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	c0011	1032	4	1	1	0	0	2	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	c0012	1032	2	0	0	2	0	0	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	c0013	1032	2	2	0	0	0	0	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	c0014	1032	2	2	0	0	0	0	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	c0015	1032	2	2	0	0	0	0	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	c0016	1032	2	2	0	0	0	0	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	c0017	657	2	2	0	0	0	0	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	c0018	1032	1	1	0	0	0	0	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	c0019	1032	1	1	0	0	0	0	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	c0020	1032	1	1	0	0	0	0	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	c0021	1032	1	1	0	0	0	0	copy fasta	SMCO2	chr12	27441736	27507185
SMCO2_chr12_27441736_27507185	0/0	c0022	657	1	1	0	0	0	0	copy fasta	SMCO2	chr12	27441736	27507185
SMCO3_chr12_14799650_14819182	1/1	c0001	678	302	48	72	134	14	32	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	c0002	678	64	25	6	21	2	10	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	c0003	678	10	4	0	1	2	3	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	c0004	678	9	9	0	0	0	0	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	c0005	678	2	0	2	0	0	0	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	c0006	678	1	0	0	0	0	1	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	c0007	678	1	1	0	0	0	0	copy fasta	SMCO3	chr12	14799650	14819182
SMCO3_chr12_14799650_14819182	0/0	c0008	678	1	1	0	0	0	0	copy fasta	SMCO3	chr12	14799650	14819182
SMCO4_chr11_93473472_93548391	0/1	c0001	180	330	58	49	185	6	31	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	1/0	c0002	180	55	30	11	2	4	7	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	c0003	180	26	0	8	8	4	6	copy fasta	SMCO4	chr11	93473472	93548391
SMCO4_chr11_93473472_93548391	0/0	c0004	180	1	0	0	1	0	0	copy fasta	SMCO4	chr11	93473472	93548391
SMCP_chr1_152873322_152890047	1/1	c0001	351	395	78	69	198	10	38	copy fasta	SMCP	chr1	152873322	152890047
SMCP_chr1_152873322_152890047	0/0	c0002	351	21	20	1	0	0	0	copy fasta	SMCP	chr1	152873322	152890047
SMCP_chr1_152873322_152890047	0/0	c0003	351	1	1	0	0	0	0	copy fasta	SMCP	chr1	152873322	152890047
SMCP_chr1_152873322_152890047	0/0	c0004	351	1	1	0	0	0	0	copy fasta	SMCP	chr1	152873322	152890047
SMCR8_chr17_18310293_18333056	1/1	c0001	2814	135	5	23	78	8	19	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	c0002	2814	94	33	14	36	2	9	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	c0003	2814	93	18	13	53	2	7	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	c0004	2814	53	17	14	15	2	5	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	c0005	2814	13	12	1	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	c0006	2814	12	9	3	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	c0007	2814	6	0	4	0	2	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	c0008	2814	2	2	0	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	c0009	2814	2	0	0	2	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	c0010	2814	1	1	0	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	c0011	2814	1	0	0	0	0	1	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	c0012	2814	1	0	0	1	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	c0013	2814	1	0	0	0	0	1	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	c0014	2814	1	1	0	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	c0015	2814	1	0	0	1	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	c0016	2814	1	1	0	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	c0017	2814	1	0	0	1	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	c0018	2814	1	1	0	0	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	c0019	2814	1	0	0	1	0	0	copy fasta	SMCR8	chr17	18310293	18333056
SMCR8_chr17_18310293_18333056	0/0	c0020	2814	1	0	0	1	0	0	copy fasta	SMCR8	chr17	18310293	18333056