JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SOX12_chr20_320552_335224	0/0	c0007	948	1	0	0	1	0	0	copy fasta	SOX12	chr20	320552	335224
SOX13_chr1_204068115_204132743	1/1	c0001	1869	347	77	62	154	16	36	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	c0002	1869	5	5	0	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	c0003	1869	4	4	0	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	c0004	1869	2	2	0	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	c0005	1869	1	0	0	1	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	c0006	1869	1	0	1	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	c0007	1869	1	0	1	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	c0008	1869	1	0	1	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	c0009	1869	1	0	1	0	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX13_chr1_204068115_204132743	0/0	c0010	1869	1	0	0	1	0	0	copy fasta	SOX13	chr1	204068115	204132743
SOX14_chr3_137759315_137771334	1/1	c0001	723	391	90	71	172	14	42	copy fasta	SOX14	chr3	137759315	137771334
SOX14_chr3_137759315_137771334	0/0	c0002	723	2	2	0	0	0	0	copy fasta	SOX14	chr3	137759315	137771334
SOX14_chr3_137759315_137771334	0/0	c0003	723	2	0	0	2	0	0	copy fasta	SOX14	chr3	137759315	137771334
SOX14_chr3_137759315_137771334	0/0	c0004	723	1	0	0	1	0	0	copy fasta	SOX14	chr3	137759315	137771334
SOX14_chr3_137759315_137771334	0/0	c0005	723	1	0	1	0	0	0	copy fasta	SOX14	chr3	137759315	137771334
SOX14_chr3_137759315_137771334	0/0	c0006	723	1	0	0	1	0	0	copy fasta	SOX14	chr3	137759315	137771334
SOX15_chr17_7583178_7595094	1/1	c0001	702	416	94	79	187	16	38	copy fasta	SOX15	chr17	7583178	7595094
SOX15_chr17_7583178_7595094	0/0	c0002	702	1	0	0	1	0	0	copy fasta	SOX15	chr17	7583178	7595094
SOX15_chr17_7583178_7595094	0/0	c0003	702	1	0	1	0	0	0	copy fasta	SOX15	chr17	7583178	7595094
SOX17_chr8_54452935_54465892	1/1	c0001	1245	403	90	66	196	10	39	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	c0002	1245	5	0	5	0	0	0	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	c0003	1245	4	4	0	0	0	0	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	c0004	1245	2	0	0	2	0	0	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	c0005	1257	2	1	1	0	0	0	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	c0006	1245	1	0	0	0	0	1	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	c0007	1245	1	1	0	0	0	0	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	c0008	1245	1	0	0	0	0	1	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	c0009	1245	1	1	0	0	0	0	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	c0010	1245	1	1	0	0	0	0	copy fasta	SOX17	chr8	54452935	54465892
SOX17_chr8_54452935_54465892	0/0	c0011	1245	1	0	0	0	0	1	copy fasta	SOX17	chr8	54452935	54465892
SOX18_chr20_64042582_64054639	1/1	c0001	1155	333	82	73	116	15	45	copy fasta	SOX18	chr20	64042582	64054639
SOX18_chr20_64042582_64054639	0/0	c0002	1155	6	6	0	0	0	0	copy fasta	SOX18	chr20	64042582	64054639
SOX18_chr20_64042582_64054639	0/0	c0003	1155	4	4	0	0	0	0	copy fasta	SOX18	chr20	64042582	64054639
SOX18_chr20_64042582_64054639	0/0	c0004	1155	2	0	0	2	0	0	copy fasta	SOX18	chr20	64042582	64054639
SOX18_chr20_64042582_64054639	0/0	c0005	1155	1	0	0	1	0	0	copy fasta	SOX18	chr20	64042582	64054639
SOX18_chr20_64042582_64054639	0/0	c0006	1155	1	0	0	0	0	1	copy fasta	SOX18	chr20	64042582	64054639
SOX18_chr20_64042582_64054639	0/0	c0007	1155	1	0	0	1	0	0	copy fasta	SOX18	chr20	64042582	64054639
SOX18_chr20_64042582_64054639	0/0	c0008	1155	1	0	0	0	1	0	copy fasta	SOX18	chr20	64042582	64054639
SOX18_chr20_64042582_64054639	0/0	c0009	1155	1	0	0	1	0	0	copy fasta	SOX18	chr20	64042582	64054639
SOX18_chr20_64042582_64054639	0/0	c0010	1155	1	0	1	0	0	0	copy fasta	SOX18	chr20	64042582	64054639
SOX18_chr20_64042582_64054639	0/0	c0011	1155	1	0	0	1	0	0	copy fasta	SOX18	chr20	64042582	64054639
SOX1_chr13_112062149_112076706	1/1	c0001	1176	323	81	55	140	16	29	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	c0002	1176	34	9	5	14	0	6	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	c0003	1176	8	0	0	8	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	c0004	1176	7	0	0	4	0	3	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	c0005	1170	4	3	0	0	0	1	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	c0006	1182	4	2	0	0	0	2	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	c0007	1176	2	1	1	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	c0008	1176	1	1	0	0	0	0	copy fasta	SOX1	chr13	112062149	112076706