JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SOX1_chr13_112062149_112076706	0/0	c0009	1182	1	0	1	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	c0010	1176	1	0	0	0	0	1	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	c0011	1176	1	0	0	1	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	c0012	1176	1	0	0	1	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX1_chr13_112062149_112076706	0/0	c0013	1176	1	1	0	0	0	0	copy fasta	SOX1	chr13	112062149	112076706
SOX21_chr13_94704622_94717545	0/1	c0001	831	188	30	42	88	7	20	copy fasta	SOX21	chr13	94704622	94717545
SOX21_chr13_94704622_94717545	1/0	c0002	831	145	30	16	79	3	16	copy fasta	SOX21	chr13	94704622	94717545
SOX21_chr13_94704622_94717545	0/0	c0003	831	52	27	11	8	2	4	copy fasta	SOX21	chr13	94704622	94717545
SOX21_chr13_94704622_94717545	0/0	c0004	831	45	13	3	20	4	5	copy fasta	SOX21	chr13	94704622	94717545
SOX21_chr13_94704622_94717545	0/0	c0005	831	4	0	2	0	0	2	copy fasta	SOX21	chr13	94704622	94717545
SOX21_chr13_94704622_94717545	0/0	c0006	810	1	0	0	1	0	0	copy fasta	SOX21	chr13	94704622	94717545
SOX21_chr13_94704622_94717545	0/0	c0007	831	1	0	0	0	0	1	copy fasta	SOX21	chr13	94704622	94717545
SOX2_chr3_181706925_181719436	1/1	c0001	954	408	93	81	186	12	34	copy fasta	SOX2	chr3	181706925	181719436
SOX2_chr3_181706925_181719436	0/0	c0002	954	1	1	0	0	0	0	copy fasta	SOX2	chr3	181706925	181719436
SOX2_chr3_181706925_181719436	0/0	c0003	954	1	0	0	0	0	1	copy fasta	SOX2	chr3	181706925	181719436
SOX2_chr3_181706925_181719436	0/0	c0004	954	1	0	0	0	0	1	copy fasta	SOX2	chr3	181706925	181719436
SOX2_chr3_181706925_181719436	0/0	c0005	954	1	0	1	0	0	0	copy fasta	SOX2	chr3	181706925	181719436
SOX30_chr5_157620679_157657438	1/1	c0001	2262	221	46	42	109	6	16	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0002	2262	53	17	9	23	3	1	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0003	2262	39	0	3	23	5	8	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0004	2262	30	0	3	23	0	4	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0005	2262	9	9	0	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0006	2262	7	6	1	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0007	2262	5	3	2	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0008	2262	4	0	1	0	0	3	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0009	2262	3	3	0	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0010	2262	3	0	0	3	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0011	2262	2	0	0	2	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0012	2262	2	0	0	0	0	2	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0013	2262	2	0	2	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0014	2262	1	0	0	1	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0015	2262	1	1	0	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0016	2262	1	0	1	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0017	2262	1	0	1	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0018	2262	1	0	0	1	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0019	2262	1	0	1	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0020	2262	1	1	0	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0021	2262	1	0	0	1	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0022	2262	1	1	0	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0023	2262	1	0	0	1	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0024	2262	1	1	0	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0025	2262	1	0	0	1	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0026	2262	1	1	0	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX30_chr5_157620679_157657438	0/0	c0027	2262	1	1	0	0	0	0	copy fasta	SOX30	chr5	157620679	157657438
SOX3_chrX_140497985_140510069	1/1	c0001	1341	314	62	56	154	11	29	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	c0002	1341	9	9	0	0	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	c0003	1341	6	6	0	0	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	c0004	1341	3	0	3	0	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	c0005	1341	2	2	0	0	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	c0006	1341	1	0	1	0	0	0	copy fasta	SOX3	chrX	140497985	140510069